RNA–Protein interactions for RNA: ENST00000492602.5

SEC13-219, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, human

TSL 3

Gene SEC13, Length 393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEC13-219	ENST00000492602	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	6.59	□□□□□ -1.35	9e-12	■□□□□ 10
SEC13-219	ENST00000492602	MYOCD	Q8IZQ8	938 aa		6.59	□□□□□ -1.35
SEC13-219	ENST00000492602	ANKRD35	Q8N283	1001 aa		6.59	□□□□□ -1.35
SEC13-219	ENST00000492602	SMRP1	Q8NCR6	262 aa		6.59	□□□□□ -1.35
SEC13-219	ENST00000492602	KREMEN2	Q8NCW0	462 aa		6.59	□□□□□ -1.35
SEC13-219	ENST00000492602	FLCN	Q8NFG4	579 aa		6.59	□□□□□ -1.35
SEC13-219	ENST00000492602	SP7	Q8TDD2	431 aa	Predicted RBP	6.59	□□□□□ -1.35
SEC13-219	ENST00000492602	FBXO28	Q9NVF7	368 aa		6.59	□□□□□ -1.35
SEC13-219	ENST00000492602	HMG20B	Q9P0W2	317 aa		6.59	□□□□□ -1.35
SEC13-219	ENST00000492602	LRP2BP	Q9P2M1	347 aa		6.59	□□□□□ -1.35
SEC13-219	ENST00000492602	ADAMTS5	Q9UNA0	930 aa		6.59	□□□□□ -1.35
SEC13-219	ENST00000492602	USP15	Q9Y4E8	981 aa	Predicted RBP	6.59	□□□□□ -1.35
SEC13-219	ENST00000492602		R4GN57	208 aa		6.59	□□□□□ -1.35
SEC13-219	ENST00000492602	FLNB	O75369	2602 aa	Known RBP	6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	COL11A1	P12107	1806 aa	Predicted RBP	6.58	□□□□□ -1.36
SEC13-219	ENST00000492602		E9PSI1	815 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	WDR46	O15213	610 aa	Known RBP	6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	NBN	O60934	754 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	MYL3	P08590	195 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	SHMT1	P34896	483 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	CLCN5	P51795	746 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	PPP4C	P60510	307 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	HTRA4	P83105	476 aa	Predicted RBP	6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	COASY	Q13057	564 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	MTMR3	Q13615	1198 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	TMEM63B	Q5T3F8	832 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	SNRNP48	Q6IEG0	339 aa	Known RBP	6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	NAA16	Q6N069	864 aa	Predicted RBP	6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	LRRC8D	Q7L1W4	858 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	CCDC155	Q8N6L0	562 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	SPATA5	Q8NB90	893 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	AFAP1L1	Q8TED9	768 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	FGD4	Q96M96	766 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	YME1L1	Q96TA2	773 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	GPHN	Q9NQX3	736 aa	Predicted RBP	6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	POLR3E	Q9NVU0	708 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	CLEC1B	Q9P126	229 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	CDV3	Q9UKY7	258 aa	Known RBP	6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	RIPK3	Q9Y572	518 aa		6.58	□□□□□ -1.36
SEC13-219	ENST00000492602	GRM6	O15303	877 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	CIAO1	O76071	339 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	BRD1	O95696	1058 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	CXCL10	P02778	98 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	AMH	P03971	560 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	SELP	P16109	830 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	SP100	P23497	879 aa	Predicted RBP	6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	CTNNB1	P35222	781 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	USP5	P45974	858 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	CHMP4BP1	P59074	171 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	PURA	Q00577	322 aa	Known RBP	6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	EEPD1	Q7L9B9	569 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	ADGRA1	Q86SQ6	560 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	TTC6	Q86TZ1	520 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	CCDC105	Q8IYK2	499 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	UBALD2	Q8IYN6	164 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	REPS2	Q8NFH8	660 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	CAGE1	Q8TC20	777 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	XAGE2	Q96GT9	111 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	MTG1	Q9BT17	334 aa	Predicted RBP	6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	TEX13B	Q9BXU2	312 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	LMAN2L	Q9H0V9	348 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	EHD4	Q9H223	541 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	VCPKMT	Q9H867	229 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	ARHGEF10L	Q9HCE6	1279 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	PDGFC	Q9NRA1	345 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	PPP1R9A	Q9ULJ8	1098 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	BARX2	Q9UMQ3	279 aa	Predicted RBP	6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	SORCS3	Q9UPU3	1222 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602		Q9Y3F1	56 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	TANC1	Q9C0D5	1861 aa		6.57	□□□□□ -1.36
SEC13-219	ENST00000492602	ZFYVE26	Q68DK2	2539 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	PI15	O43692	258 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	RAD21	O60216	631 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	UPP2	O95045	317 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	PARN	O95453	639 aa	Known RBP	6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	ATF7	P17544	494 aa	Predicted RBP	6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	IL15	P40933	162 aa	Predicted RBP	6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	PLCD1	P51178	756 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	DYNLL1	P63167	89 aa	Known RBP	6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	CNTN2	Q02246	1040 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	DDX10	Q13206	875 aa	Known RBP	6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	MVP	Q14764	893 aa	Known RBP	6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	PTGIS	Q16647	500 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	IQSEC1	Q6DN90	963 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	NFRKB	Q6P4R8	1299 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	FBXO16	Q8IX29	292 aa	Predicted RBP	6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	CPXCR1	Q8N123	301 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	DTWD2	Q8NBA8	298 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	PPP2R3C	Q969Q6	453 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	RTKN	Q9BST9	563 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	C11orf84	Q9BUA3	381 aa	Predicted RBP	6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	SMOC2	Q9H3U7	446 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	SH2D4A	Q9H788	454 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	IGSF5	Q9NSI5	407 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	FBXO3	Q9UK99	471 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	TMX2	Q9Y320	296 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	OTOGL	Q3ZCN5	2332 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	UNC79	Q9P2D8	2635 aa		6.56	□□□□□ -1.36
SEC13-219	ENST00000492602	MCM3AP	O60318	1980 aa		6.55	□□□□□ -1.36
SEC13-219	ENST00000492602	ASB14	A6NK59	587 aa		6.55	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms