RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 CYP3A7-CYP3A51PA0A087WV96 503 aa11□□□□□ -0.65
USP54-214ENST00000492357 CCL15-CCL14A0A0B4J2E2 113 aa11□□□□□ -0.65
USP54-214ENST00000492357 GOLGA6L4A6NEF3 574 aa11□□□□□ -0.65
USP54-214ENST00000492357 TBX3O15119 743 aa11□□□□□ -0.65
USP54-214ENST00000492357 SLC26A4O43511 780 aa11□□□□□ -0.65
USP54-214ENST00000492357 SLC10A3P09131 477 aa11□□□□□ -0.65
USP54-214ENST00000492357 CYP3A7P24462 503 aa11□□□□□ -0.65
USP54-214ENST00000492357 CIITAP33076 1130 aa11□□□□□ -0.65
USP54-214ENST00000492357 SREBF1P36956 1147 aa11□□□□□ -0.65
USP54-214ENST00000492357 STAT3P40763 770 aa11□□□□□ -0.65
USP54-214ENST00000492357 HERVK_113P62684 666 aa11□□□□□ -0.65
USP54-214ENST00000492357 CCNA1P78396 465 aa11□□□□□ -0.65
USP54-214ENST00000492357 SREBF2Q12772 1141 aa11□□□□□ -0.65
USP54-214ENST00000492357 PTPAQ15257 358 aa11□□□□□ -0.65
USP54-214ENST00000492357 SF3A1Q15459 793 aaKnown RBP11□□□□□ -0.65
USP54-214ENST00000492357 CCL15Q16663 113 aa11□□□□□ -0.65
USP54-214ENST00000492357 TTC38Q5R3I4 469 aa11□□□□□ -0.65
USP54-214ENST00000492357 FOXD4L5Q5VV16 416 aaPredicted RBP11□□□□□ -0.65
USP54-214ENST00000492357 GPAT2Q6NUI2 795 aa11□□□□□ -0.65
USP54-214ENST00000492357 PIK3AP1Q6ZUJ8 805 aa11□□□□□ -0.65
USP54-214ENST00000492357 CRYGNQ8WXF5 182 aa11□□□□□ -0.65
USP54-214ENST00000492357 FOXD4L4Q8WXT5 416 aaPredicted RBP11□□□□□ -0.65
USP54-214ENST00000492357 PIBF1Q8WXW3 757 aa11□□□□□ -0.65
USP54-214ENST00000492357 MBOAT7Q96N66 472 aa11□□□□□ -0.65
USP54-214ENST00000492357 PARK7Q99497 189 aaKnown RBP11□□□□□ -0.65
USP54-214ENST00000492357 PYM1Q9BRP8 204 aaKnown RBP11□□□□□ -0.65
USP54-214ENST00000492357 ASCC2Q9H1I8 757 aaPredicted RBP11□□□□□ -0.65
USP54-214ENST00000492357 MROH8Q9H579 483 aa11□□□□□ -0.65
USP54-214ENST00000492357 ACAD9Q9H845 621 aa11□□□□□ -0.65
USP54-214ENST00000492357 MORF4L1Q9UBU8 362 aa11□□□□□ -0.65
USP54-214ENST00000492357 CNPY2Q9Y2B0 182 aa11□□□□□ -0.65
USP54-214ENST00000492357 PFASO15067 1338 aa11□□□□□ -0.65
USP54-214ENST00000492357 FRMPD4Q14CM0 1322 aa11□□□□□ -0.65
USP54-214ENST00000492357 COL11A1P12107 1806 aaPredicted RBP11□□□□□ -0.65
USP54-214ENST00000492357 FAM237AA0A1B0GTK4 181 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 B4DLN1 442 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 OPLAHO14841 1288 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 FIBPO43427 364 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 CUTAO60888 179 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 STAM2O75886 525 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 GJA5P36382 358 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 TOB1P50616 345 aaPredicted RBP10.99□□□□□ -0.65
USP54-214ENST00000492357 FOSBP53539 338 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 ATP2C1P98194 919 aaPredicted RBP10.99□□□□□ -0.65
USP54-214ENST00000492357 USH1GQ495M9 461 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 TREML2Q5T2D2 321 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 RASAL3Q86YV0 1011 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 KCTD17Q8N5Z5 321 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 TBCKQ8TEA7 893 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 SYAP1Q96A49 352 aaPredicted RBP10.99□□□□□ -0.65
USP54-214ENST00000492357 ANO3Q9BYT9 981 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 SRPRBQ9Y5M8 271 aaKnown RBP10.99□□□□□ -0.65
USP54-214ENST00000492357 STK24Q9Y6E0 443 aa10.99□□□□□ -0.65
USP54-214ENST00000492357 DTNBO60941 627 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 PRPF40AO75400 957 aaKnown RBP10.98□□□□□ -0.65
USP54-214ENST00000492357 ALDH1A1P00352 501 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 PTPREP23469 700 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 ZNF157P51786 506 aaPredicted RBP10.98□□□□□ -0.65
USP54-214ENST00000492357 TMEM132BQ14DG7 1078 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 SNRNP48Q6IEG0 339 aaKnown RBP10.98□□□□□ -0.65
USP54-214ENST00000492357 FAM173BQ6P4H8 233 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 CCDC174Q6PII3 467 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 NIPA1Q7RTP0 329 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 ABRAQ8N0Z2 381 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 KRI1Q8N9T8 703 aaKnown RBP10.98□□□□□ -0.65
USP54-214ENST00000492357 DNERQ8NFT8 737 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 CLEC4DQ8WXI8 215 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 AK8Q96MA6 479 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 AGBL1Q96MI9 1066 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 TRERF1Q96PN7 1200 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 MPHOSPH6Q99547 160 aaKnown RBP10.98□□□□□ -0.65
USP54-214ENST00000492357 P2RX7Q99572 595 aaKnown RBP10.98□□□□□ -0.65
USP54-214ENST00000492357 RAB34Q9BZG1 259 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 SPATC1LQ9H0A9 340 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 RNF146Q9NTX7 359 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 TFIP11Q9UBB9 837 aaKnown RBP10.98□□□□□ -0.65
USP54-214ENST00000492357 BIN2Q9UBW5 565 aaPredicted RBP10.98□□□□□ -0.65
USP54-214ENST00000492357 RPTORQ8N122 1335 aa10.98□□□□□ -0.65
USP54-214ENST00000492357 MAFGO15525 162 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 NEMFO60524 1076 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 BCRP11274 1271 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 ALAS1P13196 640 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 CMA1P23946 247 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 LONP1P36776 959 aaKnown RBP10.97□□□□□ -0.65
USP54-214ENST00000492357 ME1P48163 572 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 SETQ01105 290 aaPredicted RBP10.97□□□□□ -0.65
USP54-214ENST00000492357 NOGQ13253 232 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 INF2Q27J81 1249 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 Q4G0T1 1027 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 JAKMIP3Q5VZ66 844 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 RNF207Q6ZRF8 634 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 ELOA2Q8IYF1 753 aaPredicted RBP10.97□□□□□ -0.65
USP54-214ENST00000492357 SLFN12Q8IYM2 578 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 BRI3BPQ8WY22 251 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 CCDC34Q96HJ3 373 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 RAVER2Q9HCJ3 691 aaKnown RBP10.97□□□□□ -0.65
USP54-214ENST00000492357 CREBZFQ9NS37 354 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 PCDHB6Q9Y5E3 794 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 CLIC4Q9Y696 253 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 DDX49Q9Y6V7 483 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms