RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 SRGNP10124 158 aa13.96□□□□□ -0.17
HMGN1-220ENST00000492280 ADCY7P51828 1080 aa13.96□□□□□ -0.17
HMGN1-220ENST00000492280 GRB10Q13322 594 aa13.96□□□□□ -0.17
HMGN1-220ENST00000492280 TTI2Q6NXR4 508 aa13.96□□□□□ -0.17
HMGN1-220ENST00000492280 CNGA4Q8IV77 575 aa13.96□□□□□ -0.17
HMGN1-220ENST00000492280 GIMAP8Q8ND71 665 aaPredicted RBP13.96□□□□□ -0.17
HMGN1-220ENST00000492280 ATP6V0A2Q9Y487 856 aa13.96□□□□□ -0.17
HMGN1-220ENST00000492280 LTBP1Q14766 1721 aa13.96□□□□□ -0.17
HMGN1-220ENST00000492280 PCNTO95613 3336 aa13.96□□□□□ -0.17
HMGN1-220ENST00000492280 FOCADQ5VW36 1801 aa13.96□□□□□ -0.18
HMGN1-220ENST00000492280 PSMA7O14818 248 aa13.96□□□□□ -0.18
HMGN1-220ENST00000492280 SSBP05455 408 aaKnown RBP eCLIP13.96□□□□□ -0.18
HMGN1-220ENST00000492280 H2AFXP16104 143 aaPredicted RBP13.96□□□□□ -0.18
HMGN1-220ENST00000492280 ZSCAN29Q8IWY8 852 aaPredicted RBP13.96□□□□□ -0.18
HMGN1-220ENST00000492280 PCMTD1Q96MG8 357 aaPredicted RBP13.96□□□□□ -0.18
HMGN1-220ENST00000492280 RIOX1Q9H6W3 641 aa13.96□□□□□ -0.18
HMGN1-220ENST00000492280 TBC1D7Q9P0N9 293 aa13.96□□□□□ -0.18
HMGN1-220ENST00000492280 LRWD1Q9UFC0 647 aa13.96□□□□□ -0.18
HMGN1-220ENST00000492280 SCN9AQ15858 1988 aa13.96□□□□□ -0.18
HMGN1-220ENST00000492280 DDTLA6NHG4 134 aaPredicted RBP13.95□□□□□ -0.18
HMGN1-220ENST00000492280 MYMKA6NI61 221 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 RHOBTB3O94955 611 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 APOBEC3HQ6NTF7 200 aaKnown RBP13.95□□□□□ -0.18
HMGN1-220ENST00000492280 ANKRD20A12PQ8NF67 263 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 FAM163AQ96GL9 167 aaPredicted RBP13.95□□□□□ -0.18
HMGN1-220ENST00000492280 CNOT6LQ96LI5 555 aaKnown RBP13.95□□□□□ -0.18
HMGN1-220ENST00000492280 PNMA5Q96PV4 448 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 CRAMP1Q96RY5 1269 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 BLOC1S4Q9NUP1 217 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 OGFRQ9NZT2 677 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 REXO2Q9Y3B8 237 aaKnown RBP13.95□□□□□ -0.18
HMGN1-220ENST00000492280 ENC1O14682 589 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 MAP3K9P80192 1104 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 SLC27A3Q5K4L6 730 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 SP8Q8IXZ3 490 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 SNX29Q8TEQ0 813 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 LZTS2Q9BRK4 669 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 KANSL2Q9H9L4 492 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 GUCA1BQ9UMX6 200 aa13.95□□□□□ -0.18
HMGN1-220ENST00000492280 COL11A2P13942 1736 aaPredicted RBP13.94□□□□□ -0.18
HMGN1-220ENST00000492280 TTLL1O95922 423 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 TPM1P09493 284 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 ZNF543Q08ER8 600 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 GALNT17Q6IS24 598 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 SLC30A10Q6XR72 485 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 SLF2Q8IX21 1173 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 CCDC155Q8N6L0 562 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 MB21D1Q8N884 522 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 TUBGCP2Q9BSJ2 902 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 POLD4Q9HCU8 107 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 LRRC10BA6NIK2 292 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 MTIF2P46199 727 aaKnown RBP13.94□□□□□ -0.18
HMGN1-220ENST00000492280 TMED8Q6PL24 325 aaPredicted RBP13.94□□□□□ -0.18
HMGN1-220ENST00000492280 PYM1Q9BRP8 204 aaKnown RBP13.94□□□□□ -0.18
HMGN1-220ENST00000492280 FGFBP2Q9BYJ0 223 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 COA1Q9GZY4 146 aa13.94□□□□□ -0.18
HMGN1-220ENST00000492280 LGALS16A8MUM7 142 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 H7C1D1 291 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 CHRNA5P30532 468 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 SPAG1Q07617 926 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 KIF4BQ2VIQ3 1234 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 SAMD1Q6SPF0 538 aaPredicted RBP13.93□□□□□ -0.18
HMGN1-220ENST00000492280 SMAP1Q8IYB5 467 aaPredicted RBP13.93□□□□□ -0.18
HMGN1-220ENST00000492280 CDK5RAP3Q96JB5 506 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 SEMA6BQ9H3T3 888 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 HDAC6Q9UBN7 1215 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 RASSF10A6NK89 507 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 EPHB6O15197 1021 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 KIF5CO60282 957 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 APBA3O96018 575 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 PLEKP08567 350 aaPredicted RBP13.93□□□□□ -0.18
HMGN1-220ENST00000492280 TRIM21P19474 475 aaKnown RBP13.93□□□□□ -0.18
HMGN1-220ENST00000492280 STAT3P40763 770 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 PRPHP41219 470 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 ARHGAP25P42331 645 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 CYP27A1Q02318 531 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 STIM1Q13586 685 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 WDR59Q6PJI9 974 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 P2RX5Q93086 422 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 FEZ1Q99689 392 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 MAGEC2Q9UBF1 373 aaPredicted RBP13.93□□□□□ -0.18
HMGN1-220ENST00000492280 LRRC37AA6NMS7 1700 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 ITIH6Q6UXX5 1313 aa13.93□□□□□ -0.18
HMGN1-220ENST00000492280 IGKV6D-41A0A0C4DH26 115 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 NPHP3-ACAD11A0A0J9YXS1 232 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 CRKP46108 304 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 KCNB1Q14721 858 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 USH1GQ495M9 461 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 CT47A1Q5JQC4 288 aaPredicted RBP13.92□□□□□ -0.18
HMGN1-220ENST00000492280 LARP4BQ92615 738 aaKnown RBP13.92□□□□□ -0.18
HMGN1-220ENST00000492280 TEKT1Q969V4 418 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 CALML4Q96GE6 196 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 MTMR9Q96QG7 549 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 FHOD1Q9Y613 1164 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 GOLGA6L9A6NEM1 432 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 MARCH6O60337 910 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 NCAPH2Q6IBW4 605 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 SPICE1Q8N0Z3 855 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 ZNF507Q8TCN5 953 aa13.92□□□□□ -0.18
HMGN1-220ENST00000492280 FAM207AQ9NSI2 230 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms