RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 EMC9Q9Y3B6 208 aa3.34□□□□□ -1.87
HMGB1-208ENST00000490788 PDS5BQ9NTI5 1447 aa3.34□□□□□ -1.88
HMGB1-208ENST00000490788 ADGRL1O94910 1474 aa3.34□□□□□ -1.88
HMGB1-208ENST00000490788 TCAF2A6NFQ2 919 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-208ENST00000490788 MYO1BO43795 1136 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 NPHS1O60500 1241 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 ITGAVP06756 1048 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 SNRPB2P08579 225 aaKnown RBP3.33□□□□□ -1.88
HMGB1-208ENST00000490788 RAP1GAPP47736 663 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 SCRN1Q12765 414 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 RAB33AQ14088 237 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 RAB3GAP1Q15042 981 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 DDR2Q16832 855 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 SOGA3Q5TF21 947 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 BICRALQ6AI39 1079 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 GTF2IRD2BQ6EKJ0 949 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 SLCO6A1Q86UG4 719 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 GTF2IRD2Q86UP8 949 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 CILP2Q8IUL8 1156 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 SIAH1Q8IUQ4 282 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 TRIM59Q8IWR1 403 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 TOX2Q96NM4 488 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 JMJD8Q96S16 334 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 SUSD2Q9UGT4 822 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 MRC2Q9UBG0 1479 aa3.33□□□□□ -1.88
HMGB1-208ENST00000490788 CCDC85CA6NKD9 419 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 NUDT19A8MXV4 375 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 SEMA7AO75326 666 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 CPP00450 1065 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 PLS3P13797 630 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 SDHBP21912 280 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 TACR1P25103 407 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 HOXC12P31275 282 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 ECI1P42126 302 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 CORO7P57737 925 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 SRSF3P84103 164 aaKnown RBP3.32□□□□□ -1.88
HMGB1-208ENST00000490788 NR1I3Q14994 352 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 NBPF6Q5VWK0 638 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 IQCEQ6IPM2 695 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 ZNF227Q86WZ6 799 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 ANKLE2Q86XL3 938 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 CPNE8Q86YQ8 564 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 LZTR1Q8N653 840 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 CELF2-AS1Q8N7Q2 184 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 MICAL1Q8TDZ2 1067 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 BTN2A2Q8WVV5 523 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 NBPF4Q96M43 638 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 CCDC140Q96MF4 163 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 IPO9Q96P70 1041 aaKnown RBP3.32□□□□□ -1.88
HMGB1-208ENST00000490788 PLCD4Q9BRC7 762 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 NKX2-4Q9H2Z4 354 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 SP110Q9HB58 689 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 PDLIM7Q9NR12 457 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 CYP26B1Q9NR63 512 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 BTG4Q9NY30 223 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 CLEC1BQ9P126 229 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 RAPGEFL1Q9UHV5 662 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 NUDT5Q9UKK9 219 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 ACSL6Q9UKU0 697 aa3.32□□□□□ -1.88
HMGB1-208ENST00000490788 NOTOA8MTQ0 251 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 MEFVO15553 781 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-208ENST00000490788 KLF4O43474 513 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 PEX10O60683 326 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 TSPAN15O95858 294 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 APPP05067 770 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 ERVFRD-1P60508 538 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 MVKQ03426 396 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 IFRD2Q12894 506 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-208ENST00000490788 HSP90AA2PQ14568 343 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-208ENST00000490788 SLC10A6Q3KNW5 377 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 ZC3H14Q6PJT7 736 aaKnown RBP3.31□□□□□ -1.88
HMGB1-208ENST00000490788 LRRC47Q8N1G4 583 aaKnown RBP3.31□□□□□ -1.88
HMGB1-208ENST00000490788 TMEM52Q8NDY8 209 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 ST13P5Q8NFI4 369 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-208ENST00000490788 ZSCAN18Q8TBC5 510 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-208ENST00000490788 ARMC5Q96C12 935 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 SHISA4Q96DD7 197 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 CHAMP1Q96JM3 812 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 MCMBPQ9BTE3 642 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 ZNF552Q9H707 407 aaPredicted RBP3.31□□□□□ -1.88
HMGB1-208ENST00000490788 GPRC5CQ9NQ84 441 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 SIRPGQ9P1W8 387 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 RWDD3Q9Y3V2 267 aa3.31□□□□□ -1.88
HMGB1-208ENST00000490788 WDR62O43379 1518 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 RSF1Q96T23 1441 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-208ENST00000490788 TEX51A0A1B0GUA7 166 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 F8W031 263 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-208ENST00000490788 HRKO00198 91 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 RFXAPO00287 272 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 CYBBP04839 570 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 THBDP07204 575 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 CFPP27918 469 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 GTF2A2P52657 109 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 RPL11P62913 178 aaKnown RBP3.3□□□□□ -1.88
HMGB1-208ENST00000490788 PPP2R2AP63151 447 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 KCNAB2Q13303 367 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 KIR3DS1Q14943 382 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 MTERF2Q49AM1 385 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 E4F1Q66K89 784 aaPredicted RBP3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms