RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 CBX2Q14781 532 aaPredicted RBP8.88□□□□□ -0.99
COL9A1-209ENST00000489861 KIAA2013Q8IYS2 634 aa8.88□□□□□ -0.99
COL9A1-209ENST00000489861 PIP4P2Q8N4L2 257 aa8.88□□□□□ -0.99
COL9A1-209ENST00000489861 TMEM105Q8N8V8 129 aa8.88□□□□□ -0.99
COL9A1-209ENST00000489861 RETREG2Q8NC44 543 aa8.88□□□□□ -0.99
COL9A1-209ENST00000489861 AP5M1Q9H0R1 490 aa8.88□□□□□ -0.99
COL9A1-209ENST00000489861 VCPKMTQ9H867 229 aa8.88□□□□□ -0.99
COL9A1-209ENST00000489861 PDGFCQ9NRA1 345 aa8.88□□□□□ -0.99
COL9A1-209ENST00000489861 LCTP09848 1927 aa8.88□□□□□ -0.99
COL9A1-209ENST00000489861 H3BNC9 293 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 MPHOSPH10O00566 681 aaKnown RBP8.87□□□□□ -0.99
COL9A1-209ENST00000489861 WDR46O15213 610 aaKnown RBP8.87□□□□□ -0.99
COL9A1-209ENST00000489861 ZEB2O60315 1214 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 COPB2P35606 906 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 CNTN2Q02246 1040 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 GABPAQ06546 454 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 TFCP2Q12800 502 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 GPM6BQ13491 265 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 CRBNQ96SW2 442 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 SNRKQ9NRH2 765 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 DLL3Q9NYJ7 618 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 CD207Q9UJ71 328 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 PPP1R9AQ9ULJ8 1098 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 TMX2Q9Y320 296 aa8.87□□□□□ -0.99
COL9A1-209ENST00000489861 CNOT1A5YKK6 2376 aaKnown RBP8.87□□□□□ -0.99
COL9A1-209ENST00000489861 PTPRCP08575 1304 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 NBNO60934 754 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 NBPF20Q3BBV1 942 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 MCTP2Q6DN12 878 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 SNRNP48Q6IEG0 339 aaKnown RBP8.86□□□□□ -0.99
COL9A1-209ENST00000489861 CNKSR3Q6P9H4 555 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 TTC6Q86TZ1 520 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 RIPOR3Q96MK2 946 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 NEUROD6Q96NK8 337 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 CTAGE1Q96RT6 745 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 TEX13BQ9BXU2 312 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 COPRSQ9NQ92 184 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 INSL6Q9Y581 213 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 FANCMQ8IYD8 2048 aa8.86□□□□□ -0.99
COL9A1-209ENST00000489861 MAST4O15021 2626 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 NCK2O43639 380 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 EYA4O95677 639 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 CXCL10P02778 98 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 ARP10275 920 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 USP5P45974 858 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 SLC4A3P48751 1232 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 HTRA4P83105 476 aaPredicted RBP8.85□□□□□ -0.99
COL9A1-209ENST00000489861 PURAQ00577 322 aaKnown RBP8.85□□□□□ -0.99
COL9A1-209ENST00000489861 BFSP2Q13515 415 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 ACAP1Q15027 740 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 FAM47CQ5HY64 1035 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 TAPT1Q6NXT6 567 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.85□□□□□ -0.99
COL9A1-209ENST00000489861 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.85□□□□□ -0.99
COL9A1-209ENST00000489861 FAM9BQ8IZU0 186 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 MIGA1Q8NAN2 632 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 MSLNLQ96KJ4 702 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 PCDHGC5Q9Y5F6 944 aa8.85□□□□□ -0.99
COL9A1-209ENST00000489861 BAZ2AQ9UIF9 1905 aaKnown RBP8.84□□□□□ -0.99
COL9A1-209ENST00000489861 ABHD14A-ACY1A0A1B0GW23 586 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 CYP2E1P05181 493 aaPredicted RBP8.84□□□□□ -0.99
COL9A1-209ENST00000489861 ICAM3P32942 547 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 RRP1P56182 461 aaKnown RBP8.84□□□□□ -0.99
COL9A1-209ENST00000489861 ADAM15Q13444 863 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 PTPN21Q16825 1174 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 LRRFIP1Q32MZ4 808 aaKnown RBP8.84□□□□□ -0.99
COL9A1-209ENST00000489861 FAM83BQ5T0W9 1011 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 TMEM179Q6ZVK1 233 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 TMEM192Q8IY95 271 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 ANKRD35Q8N283 1001 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 FAM133AQ8N9E0 248 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 DHX38Q92620 1227 aaKnown RBP8.84□□□□□ -0.99
COL9A1-209ENST00000489861 RPGRIP1Q96KN7 1286 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 CEP295Q9C0D2 2601 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 IGFLR1Q9H665 355 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 CLEC1BQ9P126 229 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 Q9Y3F1 56 aa8.84□□□□□ -0.99
COL9A1-209ENST00000489861 GCN1Q92616 2671 aaKnown RBP8.84□□□□□ -0.99
COL9A1-209ENST00000489861 ASPMQ8IZT6 3477 aa8.84□□□□□ -1
COL9A1-209ENST00000489861 CACNA1IQ9P0X4 2223 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 E9PSI1 815 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 GRM6O15303 877 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 MYL3P08590 195 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 AKR1B1P15121 316 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 CYP7A1P22680 504 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 ICA1Q05084 483 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 CCDC184Q52MB2 194 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 GORABQ5T7V8 394 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 IQSEC1Q6DN90 963 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 EEPD1Q7L9B9 569 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 FBXO11Q86XK2 927 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 FBXO16Q8IX29 292 aaPredicted RBP8.83□□□□□ -1
COL9A1-209ENST00000489861 CPXCR1Q8N123 301 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 SMRP1Q8NCR6 262 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 SAMD11Q96NU1 681 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 ARHGEF10LQ9HCE6 1279 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 PIH1D3Q9NQM4 214 aaKnown RBP8.83□□□□□ -1
COL9A1-209ENST00000489861 INCENPQ9NQS7 918 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 AKAP2Q9Y2D5 859 aa8.83□□□□□ -1
COL9A1-209ENST00000489861 SALL2Q9Y467 1007 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms