RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 FRMD5Q7Z6J6 570 aa13.95□□□□□ -0.18
HDAC6-233ENST00000489352 CLEC10AQ8IUN9 316 aa13.95□□□□□ -0.18
HDAC6-233ENST00000489352 MTG1Q9BT17 334 aaPredicted RBP13.95□□□□□ -0.18
HDAC6-233ENST00000489352 SWAP70Q9UH65 585 aa13.95□□□□□ -0.18
HDAC6-233ENST00000489352 CD207Q9UJ71 328 aa13.95□□□□□ -0.18
HDAC6-233ENST00000489352 CHD6Q8TD26 2715 aa13.95□□□□□ -0.18
HDAC6-233ENST00000489352 USP17L12C9JPN9 530 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 USP17L21D6R901 530 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 LTBRP36941 435 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 CHMP4BP1P59074 171 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 CNTN2Q02246 1040 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 GABPAQ06546 454 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 COL19A1Q14993 1142 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 KIAA1211Q6ZU35 1233 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 EEPD1Q7L9B9 569 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 PKD1L2Q7Z442 2459 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 SIAH1Q8IUQ4 282 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 MRPL50Q8N5N7 158 aaKnown RBP13.94□□□□□ -0.18
HDAC6-233ENST00000489352 CHST13Q8NET6 341 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 CAGE1Q8TC20 777 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 AFAP1L1Q8TED9 768 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 IGFLR1Q9H665 355 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 COG6Q9Y2V7 657 aa13.94□□□□□ -0.18
HDAC6-233ENST00000489352 ATRXP46100 2492 aa13.93□□□□□ -0.18
HDAC6-233ENST00000489352 ZFHX4Q86UP3 3567 aa13.93□□□□□ -0.18
HDAC6-233ENST00000489352 MICAL3Q7RTP6 2002 aa13.93□□□□□ -0.18
HDAC6-233ENST00000489352 SRGAP3O43295 1099 aa13.93□□□□□ -0.18
HDAC6-233ENST00000489352 EEF2P13639 858 aaKnown RBP13.93□□□□□ -0.18
HDAC6-233ENST00000489352 PTGS1P23219 599 aa13.93□□□□□ -0.18
HDAC6-233ENST00000489352 PURAQ00577 322 aaKnown RBP13.93□□□□□ -0.18
HDAC6-233ENST00000489352 PUM1Q14671 1186 aaKnown RBP eCLIP13.93□□□□□ -0.18
HDAC6-233ENST00000489352 NFRKBQ6P4R8 1299 aa13.93□□□□□ -0.18
HDAC6-233ENST00000489352 ZBTB33Q86T24 672 aa13.93□□□□□ -0.18
HDAC6-233ENST00000489352 PRPF38AQ8NAV1 312 aaKnown RBP13.93□□□□□ -0.18
HDAC6-233ENST00000489352 RMDN1Q96DB5 314 aa13.93□□□□□ -0.18
HDAC6-233ENST00000489352 FGD4Q96M96 766 aa13.93□□□□□ -0.18
HDAC6-233ENST00000489352 AMHP03971 560 aa13.92□□□□□ -0.18
HDAC6-233ENST00000489352 AKR1B1P15121 316 aa13.92□□□□□ -0.18
HDAC6-233ENST00000489352 SELPP16109 830 aa13.92□□□□□ -0.18
HDAC6-233ENST00000489352 ZAP70P43403 619 aa13.92□□□□□ -0.18
HDAC6-233ENST00000489352 NDUFV1P49821 464 aa13.92□□□□□ -0.18
HDAC6-233ENST00000489352 PTPN11Q06124 597 aaPredicted RBP13.92□□□□□ -0.18
HDAC6-233ENST00000489352 G3BP1Q13283 466 aaKnown RBP eCLIP13.92□□□□□ -0.188e-6■□□□□ 9
HDAC6-233ENST00000489352 PTGISQ16647 500 aa13.92□□□□□ -0.18
HDAC6-233ENST00000489352 KCNG4Q8TDN1 519 aa13.92□□□□□ -0.18
HDAC6-233ENST00000489352 CCDC17Q96LX7 622 aa13.92□□□□□ -0.18
HDAC6-233ENST00000489352 CRNKL1Q9BZJ0 848 aaKnown RBP13.92□□□□□ -0.18
HDAC6-233ENST00000489352 RAVER2Q9HCJ3 691 aaKnown RBP13.92□□□□□ -0.18
HDAC6-233ENST00000489352 PIH1D3Q9NQM4 214 aaKnown RBP13.92□□□□□ -0.18
HDAC6-233ENST00000489352 PDGFCQ9NRA1 345 aa13.92□□□□□ -0.18
HDAC6-233ENST00000489352 HOMER2Q9NSB8 354 aa13.92□□□□□ -0.18
HDAC6-233ENST00000489352 RALGAPA2Q2PPJ7 1873 aa13.92□□□□□ -0.18
HDAC6-233ENST00000489352 RAD50Q92878 1312 aa13.91□□□□□ -0.18
HDAC6-233ENST00000489352 SCN10AQ9Y5Y9 1956 aa13.91□□□□□ -0.18
HDAC6-233ENST00000489352 ATP2A1O14983 1001 aa13.91□□□□□ -0.18
HDAC6-233ENST00000489352 DLX2Q07687 328 aaPredicted RBP13.91□□□□□ -0.18
HDAC6-233ENST00000489352 CTC1Q2NKJ3 1217 aa13.91□□□□□ -0.18
HDAC6-233ENST00000489352 LRRC8DQ7L1W4 858 aa13.91□□□□□ -0.18
HDAC6-233ENST00000489352 TMEM192Q8IY95 271 aa13.91□□□□□ -0.18
HDAC6-233ENST00000489352 MYOCDQ8IZQ8 938 aa13.91□□□□□ -0.18
HDAC6-233ENST00000489352 KIFC2Q96AC6 838 aa13.91□□□□□ -0.18
HDAC6-233ENST00000489352 ASIC4Q96FT7 647 aa13.91□□□□□ -0.18
HDAC6-233ENST00000489352 YME1L1Q96TA2 773 aa13.91□□□□□ -0.18
HDAC6-233ENST00000489352 KANSL2Q9H9L4 492 aa13.91□□□□□ -0.18
HDAC6-233ENST00000489352 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.91□□□□□ -0.18
HDAC6-233ENST00000489352 EP300Q09472 2414 aaPredicted RBP13.9□□□□□ -0.18
HDAC6-233ENST00000489352 MAGEB6P1A0A0J9YX57 407 aa13.9□□□□□ -0.18
HDAC6-233ENST00000489352 LOC730098B7Z3J9 87 aa13.9□□□□□ -0.18
HDAC6-233ENST00000489352 E9PSI1 815 aa13.9□□□□□ -0.18
HDAC6-233ENST00000489352 KPNA6O60684 536 aa13.9□□□□□ -0.18
HDAC6-233ENST00000489352 ST3GAL2Q16842 350 aa13.9□□□□□ -0.18
HDAC6-233ENST00000489352 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.9□□□□□ -0.18
HDAC6-233ENST00000489352 FBXO16Q8IX29 292 aaPredicted RBP13.9□□□□□ -0.18
HDAC6-233ENST00000489352 PPP1R13LQ8WUF5 828 aa13.9□□□□□ -0.18
HDAC6-233ENST00000489352 RIPOR3Q96MK2 946 aa13.9□□□□□ -0.18
HDAC6-233ENST00000489352 PRKRIP1Q9H875 184 aaPredicted RBP13.9□□□□□ -0.18
HDAC6-233ENST00000489352 CFAP47Q6ZTR5 3102 aa13.9□□□□□ -0.18
HDAC6-233ENST00000489352 HYAL1Q12794 435 aa13.89□□□□□ -0.19
HDAC6-233ENST00000489352 DUSP28Q4G0W2 176 aa13.89□□□□□ -0.19
HDAC6-233ENST00000489352 TAPT1Q6NXT6 567 aa13.89□□□□□ -0.19
HDAC6-233ENST00000489352 FBXO11Q86XK2 927 aa13.89□□□□□ -0.19
HDAC6-233ENST00000489352 AMOTL1Q8IY63 956 aa13.89□□□□□ -0.19
HDAC6-233ENST00000489352 FAM133AQ8N9E0 248 aa13.89□□□□□ -0.19
HDAC6-233ENST00000489352 OR6J1Q8NGC5 347 aa13.89□□□□□ -0.19
HDAC6-233ENST00000489352 PPP2R3CQ969Q6 453 aa13.89□□□□□ -0.19
HDAC6-233ENST00000489352 RPGRIP1Q96KN7 1286 aa13.89□□□□□ -0.19
HDAC6-233ENST00000489352 NUP88Q99567 741 aaPredicted RBP13.89□□□□□ -0.19
HDAC6-233ENST00000489352 ACAD9Q9H845 621 aa13.89□□□□□ -0.19
HDAC6-233ENST00000489352 VTA1Q9NP79 307 aa13.89□□□□□ -0.19
HDAC6-233ENST00000489352 ATG2AQ2TAZ0 1938 aa13.89□□□□□ -0.19
HDAC6-233ENST00000489352 CXCL10P02778 98 aa13.88□□□□□ -0.19
HDAC6-233ENST00000489352 COL9A2Q14055 689 aaPredicted RBP13.88□□□□□ -0.19
HDAC6-233ENST00000489352 TMED8Q6PL24 325 aaPredicted RBP13.88□□□□□ -0.19
HDAC6-233ENST00000489352 KIAA2013Q8IYS2 634 aa13.88□□□□□ -0.19
HDAC6-233ENST00000489352 DYNLL2Q96FJ2 89 aa13.88□□□□□ -0.19
HDAC6-233ENST00000489352 WDR11Q9BZH6 1224 aa13.88□□□□□ -0.19
HDAC6-233ENST00000489352 NBNO60934 754 aa13.87□□□□□ -0.19
HDAC6-233ENST00000489352 TBX10O75333 385 aa13.87□□□□□ -0.19
HDAC6-233ENST00000489352 ICAM3P32942 547 aa13.87□□□□□ -0.19
HDAC6-233ENST00000489352 HTRA4P83105 476 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms