RNA–Protein interactions for RNA: ENST00000488325.5

HLA-DOB-209, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,188 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-209ENST00000488325 CCDC85BQ15834 202 aaPredicted RBP13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 TMEM31Q5JXX7 168 aa13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 KRT40Q6A162 431 aa13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 FAM177A1Q8N128 213 aaPredicted RBP13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 LRRC47Q8N1G4 583 aaKnown RBP13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 SRBD1Q8N5C6 995 aaKnown RBP13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 DCAF4Q8WV16 495 aa13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 USP6NLQ92738 828 aa13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 ZNF396Q96N95 335 aaPredicted RBP13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 SPZ1Q9BXG8 430 aa13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 ARHGEF10LQ9HCE6 1279 aa13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 PDLIM7Q9NR12 457 aa13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 MTMR7Q9Y216 660 aa13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 V9GY48 417 aaPredicted RBP13.86□□□□□ -0.19
HLA-DOB-209ENST00000488325 TCF20Q9UGU0 1960 aaKnown RBP13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 TRIM43BA6NCK2 446 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 KLRF2D3W0D1 207 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 SLURP2P0DP57 97 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 SNHG28P0DPA3 235 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 EEF2P13639 858 aaKnown RBP13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 EPHB4P54760 987 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 PABPC4Q13310 644 aaKnown RBP eCLIP13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 FOXD4L6Q3SYB3 417 aaPredicted RBP13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 GPATCH4Q5T3I0 446 aaKnown RBP13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 FOXD4L3Q6VB84 417 aaPredicted RBP13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 SH3RF1Q7Z6J0 888 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 CMTR1Q8N1G2 835 aaKnown RBP13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 TMEM87AQ8NBN3 555 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 TRIM43Q96BQ3 446 aaPredicted RBP13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 TIFAQ96CG3 184 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 PRDM12Q9H4Q4 367 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 SH2D4AQ9H788 454 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 BRMS1Q9HCU9 246 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 ZBTB21Q9ULJ3 1066 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 LOC285556D6RIA3 1793 aa13.85□□□□□ -0.19
HLA-DOB-209ENST00000488325 CACNA1AO00555 2505 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 PEX10O60683 326 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 ASNSP08243 561 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 BMP1P13497 986 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 SCG2P13521 617 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 GUCY1A2P33402 732 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 CAP2P40123 477 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 RGS2P41220 211 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 DNM1Q05193 864 aaKnown RBP13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 PFKFB3Q16875 520 aaPredicted RBP13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 CCDC96Q2M329 555 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 TRIM60Q495X7 471 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 SLC39A5Q6ZMH5 540 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 CLEC10AQ8IUN9 316 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 STAG2Q8N3U4 1231 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 LPAR1Q92633 364 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 AIFM3Q96NN9 605 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 APBA2Q99767 749 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 SCAND2PQ9GZW5 306 aaPredicted RBP13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 DDX20Q9UHI6 824 aaKnown RBP13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 CFAP45Q9UL16 551 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 RLFQ13129 1914 aa13.84□□□□□ -0.19
HLA-DOB-209ENST00000488325 CHD9Q3L8U1 2897 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 USP17L5A8MUK1 530 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 MMP1P03956 469 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 HMGCS2P54868 508 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 ZNF543Q08ER8 600 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 SPP2Q13103 211 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 PKN1Q16512 942 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 SLFN13Q68D06 897 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 USP17L2Q6R6M4 530 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 GMCL1P1Q8NEA9 526 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 CCDC148Q8NFR7 591 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 CCDC12Q8WUD4 166 aaPredicted RBP13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 RRP36Q96EU6 259 aaKnown RBP13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 SH3GLB2Q9NR46 395 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 LMBRD1Q9NUN5 540 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 SEC63Q9UGP8 760 aaKnown RBP13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 CNPY2Q9Y2B0 182 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 MYO9BQ13459 2157 aa13.83□□□□□ -0.2
HLA-DOB-209ENST00000488325 MYH6P13533 1939 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 XIRP2A4UGR9 3374 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 hCG_1984214I3L0E3 225 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 FIBPO43427 364 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 TRAK2O60296 914 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 MSCO60682 206 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 PRPF40AO75400 957 aaKnown RBP13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 MBD3O95983 291 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 ITGB8P26012 769 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 CALML3P27482 149 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 CNGA1P29973 690 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 MAPK4P31152 587 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 SLC1A4P43007 532 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 MRE11P49959 708 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 ADGRE1Q14246 886 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 SNX17Q15036 470 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 MORN1Q5T089 497 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 GJC2Q5T442 439 aaPredicted RBP13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 ZNF713Q8N859 430 aaPredicted RBP13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 GPRC5AQ8NFJ5 357 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 FOXP1Q9H334 677 aaPredicted RBP13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 RIOX1Q9H6W3 641 aa13.82□□□□□ -0.2
HLA-DOB-209ENST00000488325 GOPCQ9HD26 462 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms