RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 H3BQF6 201 aa20.07■□□□□ 0.8
VIM-206ENST00000487938 ZBTB22O15209 634 aa20.07■□□□□ 0.8
VIM-206ENST00000487938 HNRNPLLQ8WVV9 542 aaKnown RBP20.07■□□□□ 0.8
VIM-206ENST00000487938 COA7Q96BR5 231 aa20.07■□□□□ 0.8
VIM-206ENST00000487938 NOC4LQ9BVI4 516 aaKnown RBP20.07■□□□□ 0.8
VIM-206ENST00000487938 BICDL2A1A5D9 508 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 RCCD1A6NED2 376 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 SRGAP2O75044 1071 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 ATP1A1P05023 1023 aaKnown RBP20.06■□□□□ 0.8
VIM-206ENST00000487938 FAM196AQ6ZSG2 479 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 KIAA1328Q86T90 577 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 TTYH3Q9C0H2 523 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 MAGEF1Q9HAY2 307 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 SPATA31A6Q5VVP1 1343 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 THSD7AQ9UPZ6 1657 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 MIIPQ5JXC2 388 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 MFSD14BQ5SR56 506 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 REXO1Q8N1G1 1221 aaKnown RBP20.06■□□□□ 0.8
VIM-206ENST00000487938 KIAA0895Q8NCT3 520 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 CALML4Q96GE6 196 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 SEMA6BQ9H3T3 888 aa20.06■□□□□ 0.8
VIM-206ENST00000487938 NHEJ1Q9H9Q4 299 aaPredicted RBP20.06■□□□□ 0.8
VIM-206ENST00000487938 EIF6P56537 245 aaKnown RBP20.05■□□□□ 0.8
VIM-206ENST00000487938 RHBDL3P58872 404 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 PRR5LQ6MZQ0 368 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 HDXQ7Z353 690 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 TRAPPC11Q7Z392 1133 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 NEK11Q8NG66 645 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 LACRTQ9GZZ8 138 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 PDE11AQ9HCR9 933 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 RNF216Q9NWF9 866 aaPredicted RBP20.05■□□□□ 0.8
VIM-206ENST00000487938 ZNHIT6Q9NWK9 470 aaKnown RBP20.05■□□□□ 0.8
VIM-206ENST00000487938 DUSP10Q9Y6W6 482 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 MYH1P12882 1939 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 CCDC66A2RUB6 948 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 PSMD14O00487 310 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 ERLIN1O75477 346 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 KRT83P78385 493 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 AMPD3Q01432 767 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 MEA1Q16626 185 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 DYMQ7RTS9 669 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 JAKMIP2Q96AA8 810 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 L1RE1Q9UN81 338 aa20.05■□□□□ 0.8
VIM-206ENST00000487938 TUBB4BP68371 445 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 CYP27A1Q02318 531 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 SEMA3FQ13275 785 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 GRB10Q13322 594 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 SV2BQ7L1I2 683 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 CAPZA3Q96KX2 299 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 NUP58Q9BVL2 599 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 LRWD1Q9UFC0 647 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 GGA1Q9UJY5 639 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 DDX60LQ5H9U9 1706 aaKnown RBP20.04■□□□□ 0.8
VIM-206ENST00000487938 ZBED6P86452 979 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 PICALMQ13492 652 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 CALCRLQ16602 461 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 C15orf52Q6ZUT6 534 aaKnown RBP20.04■□□□□ 0.8
VIM-206ENST00000487938 CLEC10AQ8IUN9 316 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 FAM114A1Q8IWE2 563 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 LRRC47Q8N1G4 583 aaKnown RBP20.04■□□□□ 0.8
VIM-206ENST00000487938 MMS19Q96T76 1030 aa20.04■□□□□ 0.8
VIM-206ENST00000487938 MYMKA6NI61 221 aa20.03■□□□□ 0.8
VIM-206ENST00000487938 SLC37A4O43826 429 aa20.03■□□□□ 0.8
VIM-206ENST00000487938 TDP2O95551 362 aa20.03■□□□□ 0.8
VIM-206ENST00000487938 IL1R1P14778 569 aa20.03■□□□□ 0.8
VIM-206ENST00000487938 CYLC1P35663 651 aaPredicted RBP20.03■□□□□ 0.8
VIM-206ENST00000487938 CNNM4Q6P4Q7 775 aa20.03■□□□□ 0.8
VIM-206ENST00000487938 GPCPD1Q9NPB8 672 aa20.03■□□□□ 0.8
VIM-206ENST00000487938 BLOC1S4Q9NUP1 217 aa20.03■□□□□ 0.8
VIM-206ENST00000487938 PDHBP11177 359 aa20.02■□□□□ 0.8
VIM-206ENST00000487938 ERCC3P19447 782 aa20.02■□□□□ 0.8
VIM-206ENST00000487938 GPIHBP1Q8IV16 184 aa20.02■□□□□ 0.8
VIM-206ENST00000487938 GJD4Q96KN9 370 aaPredicted RBP20.02■□□□□ 0.8
VIM-206ENST00000487938 PNMA5Q96PV4 448 aa20.02■□□□□ 0.8
VIM-206ENST00000487938 MTMR9Q96QG7 549 aa20.02■□□□□ 0.8
VIM-206ENST00000487938 RIOX1Q9H6W3 641 aa20.02■□□□□ 0.8
VIM-206ENST00000487938 POLLQ9UGP5 575 aa20.02■□□□□ 0.8
VIM-206ENST00000487938 SAR1BQ9Y6B6 198 aa20.02■□□□□ 0.8
VIM-206ENST00000487938 CDK5RAP2Q96SN8 1893 aa20.02■□□□□ 0.8
VIM-206ENST00000487938 KRT86O43790 486 aa20.02■□□□□ 0.8
VIM-206ENST00000487938 EDIL3O43854 480 aa20.02■□□□□ 0.8
VIM-206ENST00000487938 N4BP1O75113 896 aaKnown RBP20.02■□□□□ 0.8
VIM-206ENST00000487938 PLEKP08567 350 aaPredicted RBP20.02■□□□□ 0.8
VIM-206ENST00000487938 ATP2B4P23634 1241 aa20.02■□□□□ 0.8
VIM-206ENST00000487938 MACROD2A1Z1Q3 448 aa20.01■□□□□ 0.79
VIM-206ENST00000487938 POTEMA6NI47 508 aa20.01■□□□□ 0.79
VIM-206ENST00000487938 PLCG2P16885 1265 aa20.01■□□□□ 0.79
VIM-206ENST00000487938 FKBP15Q5T1M5 1219 aa20.01■□□□□ 0.79
VIM-206ENST00000487938 RETREG2Q8NC44 543 aa20.01■□□□□ 0.79
VIM-206ENST00000487938 CDK5RAP3Q96JB5 506 aa20.01■□□□□ 0.79
VIM-206ENST00000487938 NUDT12Q9BQG2 462 aa20.01■□□□□ 0.79
VIM-206ENST00000487938 ADAM21Q9UKJ8 722 aa20.01■□□□□ 0.79
VIM-206ENST00000487938 SMARCA1P28370 1054 aa20.01■□□□□ 0.79
VIM-206ENST00000487938 KRT26Q7Z3Y9 468 aa20.01■□□□□ 0.79
VIM-206ENST00000487938 CERS3Q8IU89 383 aa20.01■□□□□ 0.79
VIM-206ENST00000487938 ZSCAN29Q8IWY8 852 aaPredicted RBP20.01■□□□□ 0.79
VIM-206ENST00000487938 EIF3CLB5ME19 914 aaKnown RBP20■□□□□ 0.79
VIM-206ENST00000487938 F8W031 263 aaPredicted RBP20■□□□□ 0.79
VIM-206ENST00000487938 C6orf229H3BNL8 230 aa20■□□□□ 0.79
VIM-206ENST00000487938 IPO7O95373 1038 aaKnown RBP20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms