RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 FXR2P51116 673 aaKnown RBP eCLIP15.9■□□□□ 0.14
CLK3-204ENST00000483723 USP14P54578 494 aa15.9■□□□□ 0.14
CLK3-204ENST00000483723 USH1GQ495M9 461 aa15.9■□□□□ 0.14
CLK3-204ENST00000483723 POTEDQ86YR6 584 aa15.9■□□□□ 0.14
CLK3-204ENST00000483723 DHX40Q8IX18 779 aaKnown RBP15.9■□□□□ 0.14
CLK3-204ENST00000483723 TRIML1Q8N9V2 468 aa15.9■□□□□ 0.14
CLK3-204ENST00000483723 PRPF38AQ8NAV1 312 aaKnown RBP15.9■□□□□ 0.14
CLK3-204ENST00000483723 KIFC2Q96AC6 838 aa15.9■□□□□ 0.14
CLK3-204ENST00000483723 AS3MTQ9HBK9 375 aa15.9■□□□□ 0.14
CLK3-204ENST00000483723 GOLGB1Q14789 3259 aaKnown RBP15.89■□□□□ 0.13
CLK3-204ENST00000483723 TXLNAP40222 546 aa15.89■□□□□ 0.13
CLK3-204ENST00000483723 BACE1P56817 501 aa15.89■□□□□ 0.13
CLK3-204ENST00000483723 PDIA5Q14554 519 aa15.89■□□□□ 0.13
CLK3-204ENST00000483723 ZRSR1Q15695 479 aaKnown RBP15.89■□□□□ 0.13
CLK3-204ENST00000483723 CALCRLQ16602 461 aa15.89■□□□□ 0.13
CLK3-204ENST00000483723 ZKSCAN4Q969J2 545 aaPredicted RBP15.89■□□□□ 0.13
CLK3-204ENST00000483723 C12orf42Q96LP6 360 aa15.89■□□□□ 0.13
CLK3-204ENST00000483723 WRNIP1Q96S55 665 aa15.89■□□□□ 0.13
CLK3-204ENST00000483723 MAN1B1Q9UKM7 699 aa15.89■□□□□ 0.13
CLK3-204ENST00000483723 MRPL11Q9Y3B7 192 aaKnown RBP15.89■□□□□ 0.13
CLK3-204ENST00000483723 BIN1O00499 593 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 USP2O75604 605 aaPredicted RBP15.88■□□□□ 0.13
CLK3-204ENST00000483723 YY1P25490 414 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 SREBF1P36956 1147 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 SPP2Q13103 211 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 MORC3Q14149 939 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 GRAMD1CQ8IYS0 662 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 ZNF280CQ8ND82 737 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.88■□□□□ 0.13
CLK3-204ENST00000483723 SMARCE1Q969G3 411 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 SLF1Q9BQI6 1058 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 DISC1Q9NRI5 854 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 ZNF536O15090 1300 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 ABCB11O95342 1321 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 PARP14Q460N5 1801 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 ADCY5O95622 1261 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 CYP3A4P08684 503 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 BMP6P22004 513 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 CDC25AP30304 524 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 CIITAP33076 1130 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 UBA7P41226 1012 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 DPYDQ12882 1025 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 NAALADL2Q58DX5 795 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 DPY19L2Q6NUT2 758 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 LDHDQ86WU2 507 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 HAS1Q92839 578 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 MTRQ99707 1265 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 PICK1Q9NRD5 415 aa15.88■□□□□ 0.13
CLK3-204ENST00000483723 DDX25Q9UHL0 483 aaKnown RBP15.88■□□□□ 0.13
CLK3-204ENST00000483723 ZC3H4Q9UPT8 1303 aaKnown RBP15.87■□□□□ 0.13
CLK3-204ENST00000483723 PAPPA2Q9BXP8 1791 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 PP2D1A8MPX8 630 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 C19orf81C9J6K1 198 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 SMC2O95347 1197 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 ICAM1P05362 532 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 FDX1P10109 184 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 TAL1P17542 331 aaPredicted RBP15.87■□□□□ 0.13
CLK3-204ENST00000483723 VCAM1P19320 739 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 TECP42680 631 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 ARHGAP4P98171 946 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 GHRHRQ02643 423 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 MTMR2Q13614 643 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 KARSQ15046 597 aaKnown RBP15.87■□□□□ 0.13
CLK3-204ENST00000483723 HS1BP3Q53T59 392 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 CCDC174Q6PII3 467 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 DCPSQ96C86 337 aaKnown RBP15.87■□□□□ 0.13
CLK3-204ENST00000483723 GSDMAQ96QA5 445 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 MMTAG2Q9BU76 263 aaKnown RBP15.87■□□□□ 0.13
CLK3-204ENST00000483723 CCDC39Q9UFE4 941 aa15.87■□□□□ 0.13
CLK3-204ENST00000483723 SPDYE3A6NKU9 549 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 IKBKBO14920 756 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 GTPBP6O43824 516 aaPredicted RBP15.86■□□□□ 0.13
CLK3-204ENST00000483723 TXKP42681 527 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 NCAPHQ15003 741 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 Q4G0T1 1027 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 RRAGBQ5VZM2 374 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 SARM1Q6SZW1 724 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 USP50Q70EL3 339 aaPredicted RBP15.86■□□□□ 0.13
CLK3-204ENST00000483723 CABP7Q86V35 215 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 MLKLQ8NB16 471 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 ZC3H15Q8WU90 426 aaKnown RBP15.86■□□□□ 0.13
CLK3-204ENST00000483723 TBC1D5Q92609 795 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 CUEDC2Q9H467 287 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 SLC38A10Q9HBR0 1119 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 KCNMB3Q9NPA1 279 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 PPP1R9AQ9ULJ8 1098 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 RLFQ13129 1914 aa15.86■□□□□ 0.13
CLK3-204ENST00000483723 GOLGA6L19H0YKK7 550 aa15.85■□□□□ 0.13
CLK3-204ENST00000483723 GCOM1H8Y6P7 765 aaPredicted RBP15.85■□□□□ 0.13
CLK3-204ENST00000483723 POLR2MP0CAP2 368 aa15.85■□□□□ 0.13
CLK3-204ENST00000483723 AFMP43652 599 aa15.85■□□□□ 0.13
CLK3-204ENST00000483723 MAP3K9P80192 1104 aa15.85■□□□□ 0.13
CLK3-204ENST00000483723 CT47A1Q5JQC4 288 aaPredicted RBP15.85■□□□□ 0.13
CLK3-204ENST00000483723 ISM2Q6H9L7 571 aa15.85■□□□□ 0.13
CLK3-204ENST00000483723 MAGEF1Q9HAY2 307 aa15.85■□□□□ 0.13
CLK3-204ENST00000483723 KBTBD4Q9NVX7 518 aa15.85■□□□□ 0.13
CLK3-204ENST00000483723 PNMA2Q9UL42 364 aa15.85■□□□□ 0.13
CLK3-204ENST00000483723 FZD1Q9UP38 647 aa15.85■□□□□ 0.13
CLK3-204ENST00000483723 AFG3L2Q9Y4W6 797 aa15.85■□□□□ 0.13
CLK3-204ENST00000483723 ZHX2Q9Y6X8 837 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms