RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 SMCHD1A6NHR9 2005 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 RBBP6Q7Z6E9 1792 aaKnown RBP9.43□□□□□ -0.9
USP4-210ENST00000483212 NFIBO00712 420 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 FIBPO43427 364 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 PEX10O60683 326 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 HSD17B4P51659 736 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 ZNF157P51786 506 aaPredicted RBP9.43□□□□□ -0.9
USP4-210ENST00000483212 IRX3P78415 501 aaPredicted RBP9.43□□□□□ -0.9
USP4-210ENST00000483212 PABPC4Q13310 644 aaKnown RBP eCLIP9.43□□□□□ -0.9
USP4-210ENST00000483212 AP3B2Q13367 1082 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 GNL2Q13823 731 aaKnown RBP9.43□□□□□ -0.9
USP4-210ENST00000483212 NONOQ15233 471 aaKnown RBP eCLIP9.43□□□□□ -0.9
USP4-210ENST00000483212 MUM1L1Q5H9M0 696 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 JAKMIP3Q5VZ66 844 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 ANO1Q5XXA6 986 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 CPXCR1Q8N123 301 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 MB21D1Q8N884 522 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 PGBD1Q96JS3 809 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 DCBLD2Q96PD2 775 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 TEX13BQ9BXU2 312 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 SCAND2PQ9GZW5 306 aaPredicted RBP9.43□□□□□ -0.9
USP4-210ENST00000483212 TXNRD2Q9NNW7 524 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 RBPJLQ9UBG7 517 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 CFAP45Q9UL16 551 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 MRPL11Q9Y3B7 192 aaKnown RBP9.43□□□□□ -0.9
USP4-210ENST00000483212 PCDHB6Q9Y5E3 794 aa9.43□□□□□ -0.9
USP4-210ENST00000483212 FRMPD4Q14CM0 1322 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 ADGRA2Q96PE1 1338 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 CCDC194A0A1B0GVG4 234 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 PDHXO00330 501 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 IGF2BP3O00425 579 aaKnown RBP eCLIP9.42□□□□□ -0.9
USP4-210ENST00000483212 GADD45BO75293 160 aaPredicted RBP9.42□□□□□ -0.9
USP4-210ENST00000483212 CYP2C8P10632 490 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 ALAS1P13196 640 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 NCLP19338 710 aaKnown RBP9.42□□□□□ -0.9
USP4-210ENST00000483212 OSBPP22059 807 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 STAT3P40763 770 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 SLC39A14Q15043 492 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 SF3A1Q15459 793 aaKnown RBP9.42□□□□□ -0.9
USP4-210ENST00000483212 INF2Q27J81 1249 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 TKFCQ3LXA3 575 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 TTC38Q5R3I4 469 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 MCTP2Q6DN12 878 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 SNRNP48Q6IEG0 339 aaKnown RBP9.42□□□□□ -0.9
USP4-210ENST00000483212 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.42□□□□□ -0.9
USP4-210ENST00000483212 RIOX2Q8IUF8 465 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 SAMD3Q8N6K7 520 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 C4orf32Q8N8J7 132 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 ANO3Q9BYT9 981 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 RNF146Q9NTX7 359 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 COL20A1Q9P218 1284 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 TCHHQ07283 1943 aa9.42□□□□□ -0.9
USP4-210ENST00000483212 RPTORQ8N122 1335 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 MANSC4A6NHS7 340 aaPredicted RBP9.41□□□□□ -0.9
USP4-210ENST00000483212 DDX11L8A8MPP1 907 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 GCOM1H8Y6P7 765 aaPredicted RBP9.41□□□□□ -0.9
USP4-210ENST00000483212 PRPF40AO75400 957 aaKnown RBP9.41□□□□□ -0.9
USP4-210ENST00000483212 POLR2MP0CAP2 368 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 HOXA13P31271 388 aaPredicted RBP9.41□□□□□ -0.9
USP4-210ENST00000483212 SREBF1P36956 1147 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 CEBPZQ03701 1054 aaKnown RBP9.41□□□□□ -0.9
USP4-210ENST00000483212 Q3C1V9 767 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 SLC30A10Q6XR72 485 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 NEK8Q86SG6 692 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 SYTL5Q8TDW5 730 aaPredicted RBP9.41□□□□□ -0.9
USP4-210ENST00000483212 TBCKQ8TEA7 893 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 GTF3C2Q8WUA4 911 aaPredicted RBP9.41□□□□□ -0.9
USP4-210ENST00000483212 CCDC102AQ96A19 550 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 SPATA32Q96LK8 384 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 MBOAT7Q96N66 472 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 TRERF1Q96PN7 1200 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 MOV10L1Q9BXT6 1211 aaKnown RBP9.41□□□□□ -0.9
USP4-210ENST00000483212 MAF1Q9H063 256 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 SPATC1LQ9H0A9 340 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 R3HDMLQ9H3Y0 253 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 ZCCHC17Q9NP64 241 aaKnown RBP9.41□□□□□ -0.9
USP4-210ENST00000483212 MAP3K20Q9NYL2 800 aaKnown RBP9.41□□□□□ -0.9
USP4-210ENST00000483212 MORF4L1Q9UBU8 362 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 PNMA3Q9UL41 463 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 NOL7Q9UMY1 257 aaKnown RBP9.41□□□□□ -0.9
USP4-210ENST00000483212 RABGAP1Q9Y3P9 1069 aa9.41□□□□□ -0.9
USP4-210ENST00000483212 RASSF10A6NK89 507 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 SPTLC2O15270 562 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 PPP6R2O75170 966 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 TDP2O95551 362 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 CFBP00751 764 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 FOSP01100 380 aaPredicted RBP9.4□□□□□ -0.9
USP4-210ENST00000483212 RPS6P62753 249 aaKnown RBP9.4□□□□□ -0.9
USP4-210ENST00000483212 ATP2C1P98194 919 aaPredicted RBP9.4□□□□□ -0.9
USP4-210ENST00000483212 ORC2Q13416 577 aaPredicted RBP9.4□□□□□ -0.9
USP4-210ENST00000483212 ZNF174Q15697 407 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 AXDND1Q5T1B0 1012 aaPredicted RBP9.4□□□□□ -0.9
USP4-210ENST00000483212 MOXD1Q6UVY6 613 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 MCF2L2Q86YR7 1114 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 CHST13Q8NET6 341 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 KCNG4Q8TDN1 519 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 ZIC5Q96T25 663 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 ACAD9Q9H845 621 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 A1CFQ9NQ94 594 aaKnown RBP9.4□□□□□ -0.9
USP4-210ENST00000483212 CREBZFQ9NS37 354 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms