RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 TDRD12Q587J7 1177 aaKnown RBP20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 TTI2Q6NXR4 508 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 TOM1L2Q6ZVM7 507 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 PYM1Q9BRP8 204 aaKnown RBP20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 RNF41Q9H4P4 317 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 PACSIN2Q9UNF0 486 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 SIPA1L3O60292 1781 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 SPATA31A3Q5VYP0 1347 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 EPHB6O15197 1021 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 EZRP15311 586 aaKnown RBP20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 RETREG2Q8NC44 543 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 ESR2Q92731 530 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 TLR10Q9BXR5 811 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 PDE8BO95263 885 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 FTCDO95954 541 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 VEGFAP15692 232 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 UBA7P41226 1012 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 GFPT1Q06210 699 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 ANKRD40Q6AI12 368 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 RASGRP4Q8TDF6 673 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 MTMR8Q96EF0 704 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 DISC1Q9NRI5 854 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 SLIT3O75094 1523 aa20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 BCL9LQ86UU0 1499 aa20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 PRPF3O43395 683 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 PPP1R12BO60237 982 aaPredicted RBP20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 ITIH3Q06033 890 aa20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 ENAHQ8N8S7 591 aaPredicted RBP20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 DUSP9Q99956 384 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 IQSEC3Q9UPP2 1182 aaPredicted RBP20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 OPLAHO14841 1288 aa20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 C21orf2O43822 256 aa20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 NAA25Q14CX7 972 aa20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 ENOX2Q16206 610 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 PROCA1Q8NCQ7 364 aaPredicted RBP20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 PIK3R5Q8WYR1 880 aa20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 TBC1D31Q96DN5 1066 aa20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 MEGF6O75095 1541 aa20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 DDX60Q8IY21 1712 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 TMEM94Q12767 1356 aa20.79■□□□□ 0.92
CCDC88B-207ENST00000479965 CYP2D7A0A087X1C5 515 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 DNM1LO00429 736 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 PDE4DQ08499 809 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 RASGRF1Q13972 1273 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 KRT28Q7Z3Y7 464 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 CASKIN2Q8WXE0 1202 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 RUBCNQ92622 972 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 HPS3Q969F9 1004 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 RIC1Q4ADV7 1423 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 UQCRFS1P1P0C7P4 283 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 PRLRP16471 622 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 ITGB3BPQ13352 177 aaPredicted RBP20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 FUKQ8N0W3 1084 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 NOX5Q96PH1 765 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 ISCA1Q9BUE6 129 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 LRP2BPQ9P2M1 347 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 GBP2P32456 591 aaPredicted RBP20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 NPY5RQ15761 445 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 QPCTQ16769 361 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 PTPROQ16827 1216 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 OSBPL7Q9BZF2 842 aa20.78■□□□□ 0.92
CCDC88B-207ENST00000479965 RTL9Q8NET4 1388 aa20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 ATRNO75882 1429 aa20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 HMGB1P1B2RPK0 211 aaPredicted RBP20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 CABLES1Q8TDN4 633 aa20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 TPX2Q9ULW0 747 aaKnown RBP20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 GMNCA6NCL1 334 aa20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 LRRC53A6NM62 1247 aa20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 GCOM1H8Y6P7 765 aaPredicted RBP20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 MYZAPP0CAP1 466 aa20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 GCFC2P16383 781 aaKnown RBP20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 TNFRSF25Q93038 417 aa20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 P2RX5Q93086 422 aa20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 TACO1Q9BSH4 297 aaKnown RBP20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 PLAGL2Q9UPG8 496 aa20.77■□□□□ 0.92
CCDC88B-207ENST00000479965 FCER1AP12319 257 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 SLC1A4P43007 532 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 NAALADL2Q58DX5 795 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 KLHDC7AQ5VTJ3 777 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 ZNF572Q7Z3I7 529 aaPredicted RBP20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 SKAP2O75563 359 aaPredicted RBP20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 CSF1RP07333 972 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 ASIC1P78348 528 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 SEC23AQ15436 765 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 LRCH2Q5VUJ6 765 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 DTHD1Q6ZMT9 781 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 CACNA2D4Q7Z3S7 1137 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 ZSCAN10Q96SZ4 725 aaPredicted RBP20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 GDF3Q9NR23 364 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 FUT2Q10981 343 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 STK4Q13043 487 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 MIIPQ5JXC2 388 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 FAM228AQ86W67 206 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 ZBTB38Q8NAP3 1195 aaPredicted RBP20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 SGSM3Q96HU1 749 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 ABCF2Q9UG63 623 aa20.76■□□□□ 0.91
CCDC88B-207ENST00000479965 NID2Q14112 1375 aa20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 LONP1P36776 959 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 EHHADHQ08426 723 aa20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 GLE1Q53GS7 698 aaKnown RBP20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms