RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	BAAT	Q14032	418 aa	Predicted RBP	11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	OLFML2B	Q68BL8	750 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	FGD4	Q96M96	766 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	SPZ1	Q9BXG8	430 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	AMN	Q9BXJ7	453 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	AGXT2	Q9BYV1	514 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	PNMA2	Q9UL42	364 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	PCDHA1	Q9Y5I3	950 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	DDX49	Q9Y6V7	483 aa	Known RBP	11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	COL11A1	P12107	1806 aa	Predicted RBP	11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	PFAS	O15067	1338 aa		11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	ABCB11	O95342	1321 aa		11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	PNMA6F	A0A0J9YX94	578 aa		11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	MGAM	O43451	1857 aa		11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	CCND3	P30281	292 aa	Predicted RBP	11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	PRAMEF19	Q5SWL8	479 aa		11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	MAP3K21	Q5TCX8	1036 aa		11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	RNF207	Q6ZRF8	634 aa		11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	NOL8	Q76FK4	1167 aa	Known RBP	11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	FBXL16	Q8N461	479 aa		11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	RRP36	Q96EU6	259 aa	Known RBP	11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	LZTS2	Q9BRK4	669 aa		11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	HMX1	Q9NP08	348 aa	Predicted RBP	11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	RBM28	Q9NW13	759 aa	Known RBP	11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	PLXNB2	O15031	1838 aa		11.9	□□□□□ -0.5
HDAC6-222	ENST00000478095	ASTN1	O14525	1302 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	RPTOR	Q8N122	1335 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	CNTNAP5	Q8WYK1	1306 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	SOWAHB	A6NEL2	793 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	PPFIA3	O75145	1194 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	IGHA2	P01877	340 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	EN2	P19622	333 aa	Predicted RBP	11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	CNGA1	P29973	690 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	ADD1	P35611	737 aa	Known RBP	11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	RPS6	P62753	249 aa	Known RBP	11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	CCT2	P78371	535 aa	Known RBP	11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	STK3	Q13188	491 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	IFFO2	Q5TF58	517 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	FAM133A	Q8N9E0	248 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	TRPV1	Q8NER1	839 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	TBC1D5	Q92609	795 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	DEFB118	Q96PH6	123 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	TINF2	Q9BSI4	451 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	C22orf23	Q9BZE7	217 aa		11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	NCOA5	Q9HCD5	579 aa	Known RBP	11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	SEC63	Q9UGP8	760 aa	Known RBP	11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	COLQ	Q9Y215	455 aa	Predicted RBP	11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	DIS3	Q9Y2L1	958 aa	Known RBP	11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	MRPL11	Q9Y3B7	192 aa	Known RBP	11.89	□□□□□ -0.51
HDAC6-222	ENST00000478095	ZNF236	Q9UL36	1845 aa		11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	OPLAH	O14841	1288 aa		11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	CFB	P00751	764 aa		11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	CYBA	P13498	195 aa		11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	PDIA3	P30101	505 aa	Known RBP	11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	RCAN1	P53805	252 aa		11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	AK2	P54819	239 aa		11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	ARMCX2	Q7L311	632 aa		11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	U2AF1L4	Q8WU68	220 aa	Known RBP	11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	11.88	□□□□□ -0.51	4e-7	■□□□□ 8.7
HDAC6-222	ENST00000478095	IL17RA	Q96F46	866 aa		11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	ZFP91	Q96JP5	570 aa	Predicted RBP	11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	PAK6	Q9NQU5	681 aa	Predicted RBP	11.88	□□□□□ -0.51
HDAC6-222	ENST00000478095	BRCA2	P51587	3418 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	SNAI1	O95863	264 aa	Predicted RBP	11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	GJB1	P08034	283 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	SMARCA1	P28370	1054 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	HOXA13	P31271	388 aa	Predicted RBP	11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	ALDH5A1	P51649	535 aa	Predicted RBP	11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	NEK4	P51957	841 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	EVC	P57679	992 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	FUT2	Q10981	343 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	ANO1	Q5XXA6	986 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	HEATR3	Q7Z4Q2	680 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	MCF2L2	Q86YR7	1114 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	SYTL5	Q8TDW5	730 aa	Predicted RBP	11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	PHKB	Q93100	1093 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	SHISA4	Q96DD7	197 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	OCEL1	Q9H607	264 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	UPF2	Q9HAU5	1272 aa	Known RBP	11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	COL20A1	Q9P218	1284 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	ZHX1	Q9UKY1	873 aa	Predicted RBP	11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	TPCN1	Q9ULQ1	816 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	CNPY2	Q9Y2B0	182 aa		11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095		V9GY48	417 aa	Predicted RBP	11.87	□□□□□ -0.51
HDAC6-222	ENST00000478095	SYNGAP1	Q96PV0	1343 aa		11.86	□□□□□ -0.51
HDAC6-222	ENST00000478095	DOCK3	Q8IZD9	2030 aa		11.86	□□□□□ -0.51
HDAC6-222	ENST00000478095	CCDC196	A0A1B0GTZ2	297 aa		11.86	□□□□□ -0.51
HDAC6-222	ENST00000478095	GJA8	P48165	433 aa		11.86	□□□□□ -0.51
HDAC6-222	ENST00000478095	WWC2	Q6AWC2	1192 aa		11.86	□□□□□ -0.51
HDAC6-222	ENST00000478095	MAMDC4	Q6UXC1	1216 aa		11.86	□□□□□ -0.51
HDAC6-222	ENST00000478095	EEPD1	Q7L9B9	569 aa		11.86	□□□□□ -0.51
HDAC6-222	ENST00000478095	RGS22	Q8NE09	1264 aa		11.86	□□□□□ -0.51
HDAC6-222	ENST00000478095	LENG1	Q96BZ8	264 aa	Predicted RBP	11.86	□□□□□ -0.51
HDAC6-222	ENST00000478095	KIF2C	Q99661	725 aa		11.86	□□□□□ -0.51
HDAC6-222	ENST00000478095	NID2	Q14112	1375 aa		11.86	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms