RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TFCP2Q12800 502 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 MVPQ14764 893 aaKnown RBP8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 FKBP1CQ5VVH2 108 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 APOBEC3HQ6NTF7 200 aaKnown RBP8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 FAM83AQ86UY5 434 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 ITPRIPQ8IWB1 547 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 ANKRD13AQ8IZ07 590 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 ZGPATQ8N5A5 531 aaKnown RBP8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 HOOK2Q96ED9 719 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 WNK4Q96J92 1243 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 TEPSINQ96N21 525 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 UBL7Q96S82 380 aaPredicted RBP8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 TMEM39BQ9GZU3 492 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 KLK14Q9P0G3 267 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 RPAP1Q9BWH6 1393 aaPredicted RBP8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 MANSC4A6NHS7 340 aaPredicted RBP8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 RARAP10276 462 aa8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 SPINK2P20155 84 aa8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 PRDX5P30044 214 aa8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 CACNB3P54284 484 aa8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 INHBEP58166 350 aa8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 G3BP1Q13283 466 aaKnown RBP eCLIP8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 DGKZQ13574 1117 aa8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 RASGRF1Q13972 1273 aa8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 ZDHHC13Q8IUH4 622 aa8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 AGGF1Q8N302 714 aaeCLIP8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 CLMNQ96JQ2 1002 aa8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 MCOLN1Q9GZU1 580 aa8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 DAGLAQ9Y4D2 1042 aa8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 DOCK2Q92608 1830 aa8.37□□□□□ -1.07
CCDC88A-213ENST00000476903 TBC1D8O95759 1140 aa8.36□□□□□ -1.07
CCDC88A-213ENST00000476903 RLBP1P12271 317 aa8.36□□□□□ -1.07
CCDC88A-213ENST00000476903 ATP8B2P98198 1209 aa8.36□□□□□ -1.07
CCDC88A-213ENST00000476903 GORABQ5T7V8 394 aa8.36□□□□□ -1.07
CCDC88A-213ENST00000476903 DCAF15Q66K64 600 aa8.36□□□□□ -1.07
CCDC88A-213ENST00000476903 SPTY2D1Q68D10 685 aaPredicted RBP8.36□□□□□ -1.07
CCDC88A-213ENST00000476903 DZIP1Q86YF9 867 aaKnown RBP8.36□□□□□ -1.07
CCDC88A-213ENST00000476903 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.36□□□□□ -1.07
CCDC88A-213ENST00000476903 NEUROD6Q96NK8 337 aa8.36□□□□□ -1.07
CCDC88A-213ENST00000476903 TLR7Q9NYK1 1049 aaKnown RBP8.36□□□□□ -1.07
CCDC88A-213ENST00000476903 RNF114Q9Y508 228 aa8.36□□□□□ -1.07
CCDC88A-213ENST00000476903 CSADQ9Y600 493 aa8.36□□□□□ -1.07
CCDC88A-213ENST00000476903 CCDC85CA6NKD9 419 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 OPLAHO14841 1288 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 ARSDP51689 593 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 OS9Q13438 667 aaPredicted RBP8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 VGLL4Q14135 290 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 NOM1Q5C9Z4 860 aaKnown RBP8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 OTUD7BQ6GQQ9 843 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 CDC42EP5Q6NZY7 148 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 CTU1Q7Z7A3 348 aaKnown RBP8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 ARMC10Q8N2F6 343 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 SSH3Q8TE77 659 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 FAM151AQ8WW52 585 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 PLD4Q96BZ4 506 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 OPTNQ96CV9 577 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 C1orf115Q9H7X2 142 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 ELP3Q9H9T3 547 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 USP40Q9NVE5 1235 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 ABCF2Q9UG63 623 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 MAST2Q6P0Q8 1798 aa8.35□□□□□ -1.07
CCDC88A-213ENST00000476903 MYO5AQ9Y4I1 1855 aaKnown RBP8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 GAKO14976 1311 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 J3QW42 95 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 TM4SF5O14894 197 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 GSC2O15499 205 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 SURF6O75683 361 aaKnown RBP8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 MICAL2O94851 1124 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 UQCRFS1P1P0C7P4 283 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 EIF2AK2P19525 551 aaKnown RBP8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 ARID4AP29374 1257 aaPredicted RBP8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 SEC13P55735 322 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 TCP10Q12799 353 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 FZD5Q13467 585 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 SPATA5Q8NB90 893 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 ZNF296Q8WUU4 475 aaPredicted RBP8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 WRNIP1Q96S55 665 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 ZNF341Q9BYN7 854 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 SRA1Q9HD15 236 aaKnown RBP8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 GPR108Q9NPR9 543 aa8.34□□□□□ -1.07
CCDC88A-213ENST00000476903 IGF2BP3O00425 579 aaKnown RBP eCLIP8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 FKTNO75072 461 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 LGR5O75473 907 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 IGFBP4P22692 258 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 GTF2A2P52657 109 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 GSTO1P78417 241 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 NFIAQ12857 509 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 PKN2Q16513 984 aaKnown RBP8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 TNNI3KQ59H18 835 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 CCDC158Q5M9N0 1113 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 IL22RA1Q8N6P7 574 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 PANK1Q8TE04 598 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 IDI2Q9BXS1 227 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 HMG20BQ9P0W2 317 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 NOP58Q9Y2X3 529 aaKnown RBP8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 SNCAIPQ9Y6H5 919 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 FPGT-TNNI3KV9GXZ4 949 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms