RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TRAF7Q6Q0C0 670 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 TRIM34Q9BYJ4 488 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 USP44Q9H0E7 712 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 INCENPQ9NQS7 918 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 RAI14Q9P0K7 980 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 CEP126Q9P2H0 1117 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 USP15Q9Y4E8 981 aaPredicted RBP5.93□□□□□ -1.46
USP4-209ENST00000475873 LCTP09848 1927 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 RALGAPA2Q2PPJ7 1873 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 NAV1Q8NEY1 1877 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 WDFY3Q8IZQ1 3526 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 A0A1B0GUL7 405 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 GRM6O15303 877 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 PI15O43692 258 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 CIAO1O76071 339 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 BRD1O95696 1058 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 SUPT20HL2P0C7V6 817 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 MCAMP43121 646 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 ATXN1P54253 815 aaKnown RBP5.92□□□□□ -1.46
USP4-209ENST00000475873 GSTO1P78417 241 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 PURAQ00577 322 aaKnown RBP5.92□□□□□ -1.46
USP4-209ENST00000475873 NBPF20Q3BBV1 942 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 CWF19L1Q69YN2 538 aaKnown RBP5.92□□□□□ -1.46
USP4-209ENST00000475873 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.92□□□□□ -1.46
USP4-209ENST00000475873 ADGRD2Q7Z7M1 963 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 TMEM192Q8IY95 271 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 FAM133AQ8N9E0 248 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 SPATA5Q8NB90 893 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 XAGE2Q96GT9 111 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 RPGRIP1Q96KN7 1286 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 SEZ6LQ9BYH1 1024 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 EHD4Q9H223 541 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 SH2B1Q9NRF2 756 aaPredicted RBP5.92□□□□□ -1.46
USP4-209ENST00000475873 CTNNA3Q9UI47 895 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 SERPINB13Q9UIV8 391 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 PPP1R9AQ9ULJ8 1098 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 R4GN57 208 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 FANCIQ9NVI1 1328 aa5.92□□□□□ -1.46
USP4-209ENST00000475873 CSPG5O95196 566 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 LMNAP02545 664 aaKnown RBP5.91□□□□□ -1.46
USP4-209ENST00000475873 HLA-DOAP06340 250 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 ADRB1P08588 477 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 RBM10P98175 930 aaKnown RBP5.91□□□□□ -1.46
USP4-209ENST00000475873 ASTLQ6HA08 431 aaPredicted RBP5.91□□□□□ -1.46
USP4-209ENST00000475873 TAPT1Q6NXT6 567 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 CNKSR3Q6P9H4 555 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 NOL8Q76FK4 1167 aaKnown RBP5.91□□□□□ -1.46
USP4-209ENST00000475873 FBXO11Q86XK2 927 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 SUSD6Q92537 303 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 WNT8BQ93098 351 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 DDX11Q96FC9 970 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 OSBPL7Q9BZF2 842 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 IGFLR1Q9H665 355 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 VCPKMTQ9H867 229 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 BARX2Q9UMQ3 279 aaPredicted RBP5.91□□□□□ -1.46
USP4-209ENST00000475873 TMX2Q9Y320 296 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 INSL6Q9Y581 213 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 CACNA1IQ9P0X4 2223 aa5.91□□□□□ -1.46
USP4-209ENST00000475873 ABHD14A-ACY1A0A1B0GW23 586 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 DCDC2BA2VCK2 349 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 WDR46O15213 610 aaKnown RBP5.9□□□□□ -1.46
USP4-209ENST00000475873 NCK2O43639 380 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 DNAJB1P25685 340 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 ARID4AP29374 1257 aaPredicted RBP5.9□□□□□ -1.46
USP4-209ENST00000475873 COASYQ13057 564 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 COL9A3Q14050 684 aaPredicted RBP5.9□□□□□ -1.46
USP4-209ENST00000475873 WDR43Q15061 677 aaKnown RBP eCLIP5.9□□□□□ -1.46
USP4-209ENST00000475873 ANGPT1Q15389 498 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 FAM47CQ5HY64 1035 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 SNRNP48Q6IEG0 339 aaKnown RBP5.9□□□□□ -1.46
USP4-209ENST00000475873 NAA16Q6N069 864 aaPredicted RBP5.9□□□□□ -1.46
USP4-209ENST00000475873 FBXO16Q8IX29 292 aaPredicted RBP5.9□□□□□ -1.46
USP4-209ENST00000475873 RETREG2Q8NC44 543 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 KREMEN2Q8NCW0 462 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 VN1R2Q8NFZ6 395 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 PHF7Q9BWX1 381 aaPredicted RBP5.9□□□□□ -1.46
USP4-209ENST00000475873 PCGF6Q9BYE7 350 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 CABP5Q9NP86 173 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 CDH22Q9UJ99 828 aa5.9□□□□□ -1.46
USP4-209ENST00000475873 IL16Q14005 1332 aa5.9□□□□□ -1.47
USP4-209ENST00000475873 C5orf67F2Z3F1 127 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 AKR1B1P15121 316 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 SELPP16109 830 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 PLCG2P16885 1265 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 NPR3P17342 541 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 SP100P23497 879 aaPredicted RBP5.89□□□□□ -1.47
USP4-209ENST00000475873 IL15P40933 162 aaPredicted RBP5.89□□□□□ -1.47
USP4-209ENST00000475873 NDUFV1P49821 464 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 EXOSC9Q06265 439 aaKnown RBP5.89□□□□□ -1.47
USP4-209ENST00000475873 RBL2Q08999 1139 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 TFCP2Q12800 502 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 CCDC27Q2M243 656 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 TRIM71Q2Q1W2 868 aaKnown RBP5.89□□□□□ -1.47
USP4-209ENST00000475873 LRRFIP1Q32MZ4 808 aaKnown RBP5.89□□□□□ -1.47
USP4-209ENST00000475873 FAM83BQ5T0W9 1011 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 GDF6Q6KF10 455 aaPredicted RBP5.89□□□□□ -1.47
USP4-209ENST00000475873 ATF7IPQ6VMQ6 1270 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 LRRC8DQ7L1W4 858 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 EEPD1Q7L9B9 569 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 WWC1Q8IX03 1113 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms