RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ZNF827Q17R98 1081 aa6.31□□□□□ -1.4
CCDC88A-212ENST00000474059 KIAA0825Q8IV33 1275 aa6.31□□□□□ -1.4
CCDC88A-212ENST00000474059 RBBP8NLQ8NC74 664 aaPredicted RBP6.31□□□□□ -1.4
CCDC88A-212ENST00000474059 CPA5Q8WXQ8 436 aa6.31□□□□□ -1.4
CCDC88A-212ENST00000474059 GPR20Q99678 358 aa6.31□□□□□ -1.4
CCDC88A-212ENST00000474059 SPON2Q9BUD6 331 aa6.31□□□□□ -1.4
CCDC88A-212ENST00000474059 SSBP3Q9BWW4 388 aaPredicted RBP6.31□□□□□ -1.4
CCDC88A-212ENST00000474059 ZNF214Q9UL59 606 aaPredicted RBP6.31□□□□□ -1.4
CCDC88A-212ENST00000474059 AURKAO14965 403 aa6.3□□□□□ -1.4
CCDC88A-212ENST00000474059 RCSD1Q6JBY9 416 aa6.3□□□□□ -1.4
CCDC88A-212ENST00000474059 LINC00482Q8N8I6 264 aa6.3□□□□□ -1.4
CCDC88A-212ENST00000474059 ZDHHC15Q96MV8 337 aa6.3□□□□□ -1.4
CCDC88A-212ENST00000474059 TM9SF2Q99805 663 aa6.3□□□□□ -1.4
CCDC88A-212ENST00000474059 FAN1Q9Y2M0 1017 aa6.3□□□□□ -1.4
CCDC88A-212ENST00000474059 RWDD3Q9Y3V2 267 aa6.3□□□□□ -1.4
CCDC88A-212ENST00000474059 A0A087WZG4 1122 aa6.29□□□□□ -1.4
CCDC88A-212ENST00000474059 C1QTNF3-AMACRE9PGA6 284 aa6.29□□□□□ -1.4
CCDC88A-212ENST00000474059 C8BP07358 591 aa6.29□□□□□ -1.4
CCDC88A-212ENST00000474059 NOL9Q5SY16 702 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-212ENST00000474059 C1QTNF3Q9BXJ4 246 aa6.29□□□□□ -1.4
CCDC88A-212ENST00000474059 SMPD4Q9NXE4 827 aa6.29□□□□□ -1.4
CCDC88A-212ENST00000474059 GUCY2CP25092 1073 aa6.28□□□□□ -1.4
CCDC88A-212ENST00000474059 NOP2P46087 812 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-212ENST00000474059 ZXDAP98168 799 aa6.28□□□□□ -1.4
CCDC88A-212ENST00000474059 CACNB2Q08289 660 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-212ENST00000474059 TBC1D10BQ4KMP7 808 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-212ENST00000474059 KLHL25Q9H0H3 589 aa6.28□□□□□ -1.4
CCDC88A-212ENST00000474059 PPT2Q9UMR5 302 aa6.28□□□□□ -1.4
CCDC88A-212ENST00000474059 A0A1W2PQJ5 194 aa6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 STXBP3O00186 592 aa6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 TBC1D8O95759 1140 aa6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 ITGA4P13612 1032 aa6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 ZNF20P17024 532 aa6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 ERCC3P19447 782 aa6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 SARSP49591 514 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 GJA9P57773 515 aa6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 NETO2Q8NC67 525 aa6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 ADAMTS17Q8TE56 1095 aa6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 GORASP1Q9BQQ3 440 aa6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 DBR1Q9UK59 544 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 SF3B6Q9Y3B4 125 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 SIT1Q9Y3P8 196 aa6.27□□□□□ -1.41
CCDC88A-212ENST00000474059 IMPDH2P12268 514 aa6.26□□□□□ -1.41
CCDC88A-212ENST00000474059 POU4F1Q01851 419 aa6.26□□□□□ -1.41
CCDC88A-212ENST00000474059 SMAD4Q13485 552 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-212ENST00000474059 PPP2R5DQ14738 602 aa6.26□□□□□ -1.41
CCDC88A-212ENST00000474059 EEF1DP3Q658K8 133 aa6.26□□□□□ -1.41
CCDC88A-212ENST00000474059 MBLAC2Q68D91 279 aa6.26□□□□□ -1.41
CCDC88A-212ENST00000474059 ZNF513Q8N8E2 541 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-212ENST00000474059 ADCY4Q8NFM4 1077 aa6.26□□□□□ -1.41
CCDC88A-212ENST00000474059 DDX11Q96FC9 970 aa6.26□□□□□ -1.41
CCDC88A-212ENST00000474059 HAUS7Q99871 368 aa6.26□□□□□ -1.41
CCDC88A-212ENST00000474059 GULP1Q9UBP9 304 aa6.26□□□□□ -1.41
CCDC88A-212ENST00000474059 VAMP4O75379 141 aa6.25□□□□□ -1.41
CCDC88A-212ENST00000474059 TRIM26Q12899 539 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-212ENST00000474059 ZNF394Q53GI3 561 aa6.25□□□□□ -1.41
CCDC88A-212ENST00000474059 CPNE8Q86YQ8 564 aa6.25□□□□□ -1.41
CCDC88A-212ENST00000474059 LZTR1Q8N653 840 aa6.25□□□□□ -1.41
CCDC88A-212ENST00000474059 GIPC2Q8TF65 315 aa6.25□□□□□ -1.41
CCDC88A-212ENST00000474059 ZBTB8AQ96BR9 441 aa6.25□□□□□ -1.41
CCDC88A-212ENST00000474059 NTMQ9P121 344 aa6.25□□□□□ -1.41
CCDC88A-212ENST00000474059 DIS3Q9Y2L1 958 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-212ENST00000474059 PLATP00750 562 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 THBS2P35442 1172 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 ITGAEP38570 1179 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 FANCCQ00597 558 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 CDSNQ15517 529 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 PRR31Q5SQ13 230 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 CPZQ66K79 652 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 WWC2Q6AWC2 1192 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 Q8N1X5 172 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 TTC9BQ8N6N2 239 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 KLHL6Q8WZ60 621 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 PEX11GQ96HA9 241 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 C8orf49Q96NF6 230 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 FERD3LQ96RJ6 166 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 PALD1Q9ULE6 856 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 PCDHGB7Q9Y5F8 929 aa6.24□□□□□ -1.41
CCDC88A-212ENST00000474059 C7orf72A4D263 438 aa6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 RACK1P63244 317 aaKnown RBP6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 SLC9A5Q14940 896 aa6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 CCDC27Q2M243 656 aa6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 USP48Q86UV5 1035 aa6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 FAM26EQ8N5C1 309 aa6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 SLC16A11Q8NCK7 471 aa6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 PLEKHO2Q8TD55 490 aa6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 DPF3Q92784 378 aa6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 SAMD11Q96NU1 681 aa6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 C11orf84Q9BUA3 381 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 BCL2L13Q9BXK5 485 aa6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 SCAND2PQ9GZW5 306 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 WHRNQ9P202 907 aa6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 CGGBP1Q9UFW8 167 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-212ENST00000474059 EPHX1P07099 455 aa6.22□□□□□ -1.41
CCDC88A-212ENST00000474059 DPY19L1Q2PZI1 675 aa6.22□□□□□ -1.41
CCDC88A-212ENST00000474059 PCDHB10Q9UN67 800 aa6.22□□□□□ -1.41
CCDC88A-212ENST00000474059 BACE2Q9Y5Z0 518 aa6.22□□□□□ -1.41
CCDC88A-212ENST00000474059 C2orf71A6NGG8 1288 aa6.21□□□□□ -1.42
CCDC88A-212ENST00000474059 NTRK1P04629 796 aa6.21□□□□□ -1.42
CCDC88A-212ENST00000474059 RPL13P26373 211 aaKnown RBP6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms