RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 ZSWIM6Q9HCJ5 1215 aa17.56■□□□□ 0.4
LIMS1-212ENST00000474038 ASTN1O14525 1302 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 SYNGAP1Q96PV0 1343 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 KBTBD13C9JR72 458 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 PLEKHA8P1O95397 391 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 SNAI1O95863 264 aaPredicted RBP17.55■□□□□ 0.4
LIMS1-212ENST00000474038 SMARCA1P28370 1054 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 GNAQP50148 359 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 FGD1P98174 961 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 LRRC41Q15345 812 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 SYNE3Q6ZMZ3 975 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 FBXL16Q8N461 479 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 SRBD1Q8N5C6 995 aaKnown RBP17.55■□□□□ 0.4
LIMS1-212ENST00000474038 PURBQ96QR8 312 aaKnown RBP17.55■□□□□ 0.4
LIMS1-212ENST00000474038 LZTS2Q9BRK4 669 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 SPZ1Q9BXG8 430 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 AMNQ9BXJ7 453 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 TM6SF1Q9BZW5 370 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 CNPY2Q9Y2B0 182 aa17.55■□□□□ 0.4
LIMS1-212ENST00000474038 PNMA6FA0A0J9YX94 578 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 KLF18A0A0U1RQI7 1052 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 PTPDC1A2A3K4 754 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 ZBTB43O43298 467 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 EIF5BO60841 1220 aaKnown RBP17.54■□□□□ 0.4
LIMS1-212ENST00000474038 PGK1P00558 417 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 RARBP10826 455 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 RPS6P62753 249 aaKnown RBP17.54■□□□□ 0.4
LIMS1-212ENST00000474038 SLC30A10Q6XR72 485 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 RNF207Q6ZRF8 634 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 RUFY3Q7L099 469 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 CMTR1Q8N1G2 835 aaKnown RBP17.54■□□□□ 0.4
LIMS1-212ENST00000474038 RGS22Q8NE09 1264 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 BRF1Q92994 677 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 GDF15Q99988 308 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 AGXT2Q9BYV1 514 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 XPNPEP3Q9NQH7 507 aa17.54■□□□□ 0.4
LIMS1-212ENST00000474038 ZHX1Q9UKY1 873 aaPredicted RBP17.54■□□□□ 0.4
LIMS1-212ENST00000474038 KIAA1217Q5T5P2 1943 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 AKR1A1P14550 325 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 CALML3P27482 149 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 MAGEA10P43363 369 aaPredicted RBP17.53■□□□□ 0.4
LIMS1-212ENST00000474038 RTP1P59025 263 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 APOBRQ0VD83 1088 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 C8orf34Q49A92 452 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 TMTC3Q6ZXV5 915 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 ARMCX2Q7L311 632 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 PIBF1Q8WXW3 757 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 TBC1D5Q92609 795 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 FERMT2Q96AC1 680 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.53■□□□□ 0.4
LIMS1-212ENST00000474038 MRPL11Q9Y3B7 192 aaKnown RBP17.53■□□□□ 0.4
LIMS1-212ENST00000474038 PCDHA1Q9Y5I3 950 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 CYP46A1Q9Y6A2 500 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 SZT2Q5T011 3432 aa17.53■□□□□ 0.4
LIMS1-212ENST00000474038 LAMA3Q16787 3333 aa17.52■□□□□ 0.4
LIMS1-212ENST00000474038 OPLAHO14841 1288 aa17.52■□□□□ 0.4
LIMS1-212ENST00000474038 ADCYAP1R1P41586 468 aa17.52■□□□□ 0.4
LIMS1-212ENST00000474038 RTN1Q16799 776 aa17.52■□□□□ 0.4
LIMS1-212ENST00000474038 RRP36Q96EU6 259 aaKnown RBP17.52■□□□□ 0.4
LIMS1-212ENST00000474038 UPF3BQ9BZI7 483 aaKnown RBP17.52■□□□□ 0.4
LIMS1-212ENST00000474038 MAF1Q9H063 256 aa17.52■□□□□ 0.4
LIMS1-212ENST00000474038 DDX49Q9Y6V7 483 aaKnown RBP17.52■□□□□ 0.4
LIMS1-212ENST00000474038 ASB14A6NK59 587 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 GOLGA8AA7E2F4 631 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 GOLGA8BA8MQT2 603 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 RCAN1P53805 252 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 ANAPC15P60006 121 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 TRAF1Q13077 416 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 ACVR2BQ13705 512 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 SLC39A5Q6ZMH5 540 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 MCF2L2Q86YR7 1114 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 CCDC82Q8N4S0 544 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 ABHD16BQ9H3Z7 469 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 FAM217BQ9NTX9 383 aaPredicted RBP17.51■□□□□ 0.39
LIMS1-212ENST00000474038 RBM28Q9NW13 759 aaKnown RBP17.51■□□□□ 0.39
LIMS1-212ENST00000474038 ADD3Q9UEY8 706 aaKnown RBP17.51■□□□□ 0.39
LIMS1-212ENST00000474038 FAM184BQ9ULE4 1060 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 NAP1L2Q9ULW6 460 aaPredicted RBP17.51■□□□□ 0.39
LIMS1-212ENST00000474038 ATP11BQ9Y2G3 1177 aa17.51■□□□□ 0.39
LIMS1-212ENST00000474038 ADCY6O43306 1168 aa17.5■□□□□ 0.39
LIMS1-212ENST00000474038 ADAMTS4O75173 837 aa17.5■□□□□ 0.39
LIMS1-212ENST00000474038 BMP8BP34820 402 aa17.5■□□□□ 0.39
LIMS1-212ENST00000474038 ALDH5A1P51649 535 aaPredicted RBP17.5■□□□□ 0.39
LIMS1-212ENST00000474038 MDM2Q00987 491 aaPredicted RBP17.5■□□□□ 0.39
LIMS1-212ENST00000474038 TOB2Q14106 344 aaPredicted RBP17.5■□□□□ 0.39
LIMS1-212ENST00000474038 RNF180Q86T96 592 aa17.5■□□□□ 0.39
LIMS1-212ENST00000474038 MORC4Q8TE76 937 aa17.5■□□□□ 0.39
LIMS1-212ENST00000474038 KATNBL1Q9H079 304 aa17.5■□□□□ 0.39
LIMS1-212ENST00000474038 COL20A1Q9P218 1284 aa17.5■□□□□ 0.39
LIMS1-212ENST00000474038 PHF24Q9UPV7 400 aa17.5■□□□□ 0.39
LIMS1-212ENST00000474038 SYNRGQ9UMZ2 1314 aa17.49■□□□□ 0.39
LIMS1-212ENST00000474038 A0A1W2PPC1 479 aa17.49■□□□□ 0.39
LIMS1-212ENST00000474038 hCG_1642624A0A1W2PR95 340 aa17.49■□□□□ 0.39
LIMS1-212ENST00000474038 CFBP00751 764 aa17.49■□□□□ 0.39
LIMS1-212ENST00000474038 CDC27P30260 824 aa17.49■□□□□ 0.39
LIMS1-212ENST00000474038 EVCP57679 992 aa17.49■□□□□ 0.39
LIMS1-212ENST00000474038 IRX5P78411 483 aaPredicted RBP17.49■□□□□ 0.39
LIMS1-212ENST00000474038 GHRHRQ02643 423 aa17.49■□□□□ 0.39
LIMS1-212ENST00000474038 FUT2Q10981 343 aa17.49■□□□□ 0.39
LIMS1-212ENST00000474038 TRIM60Q495X7 471 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms