RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 RAG1P15918 1043 aa19.52■□□□□ 0.72
USP40-212ENST00000473191 FSCN1Q16658 493 aaKnown RBP19.52■□□□□ 0.72
USP40-212ENST00000473191 SLC35G1Q2M3R5 365 aa19.52■□□□□ 0.72
USP40-212ENST00000473191 STOX1Q6ZVD7 989 aa19.52■□□□□ 0.72
USP40-212ENST00000473191 FAM126BQ8IXS8 530 aa19.52■□□□□ 0.72
USP40-212ENST00000473191 FAM161BQ96MY7 647 aa19.52■□□□□ 0.72
USP40-212ENST00000473191 TOX2Q96NM4 488 aa19.52■□□□□ 0.72
USP40-212ENST00000473191 KRT23Q9C075 422 aa19.52■□□□□ 0.72
USP40-212ENST00000473191 VAT1LQ9HCJ6 419 aa19.52■□□□□ 0.72
USP40-212ENST00000473191 MTMR10Q9NXD2 777 aa19.52■□□□□ 0.72
USP40-212ENST00000473191 COL20A1Q9P218 1284 aa19.52■□□□□ 0.72
USP40-212ENST00000473191 TBX21Q9UL17 535 aa19.52■□□□□ 0.72
USP40-212ENST00000473191 ARVCFO00192 962 aa19.51■□□□□ 0.71
USP40-212ENST00000473191 PSMC6P62333 389 aa19.51■□□□□ 0.71
USP40-212ENST00000473191 COL9A3Q14050 684 aaPredicted RBP19.51■□□□□ 0.71
USP40-212ENST00000473191 QRICH1Q2TAL8 776 aa19.51■□□□□ 0.71
USP40-212ENST00000473191 IQSEC1Q6DN90 963 aa19.51■□□□□ 0.71
USP40-212ENST00000473191 GPR153Q6NV75 609 aa19.51■□□□□ 0.71
USP40-212ENST00000473191 CHST3Q7LGC8 479 aa19.51■□□□□ 0.71
USP40-212ENST00000473191 PPP1R13LQ8WUF5 828 aa19.51■□□□□ 0.71
USP40-212ENST00000473191 JMJD4Q9H9V9 463 aa19.51■□□□□ 0.71
USP40-212ENST00000473191 VTA1Q9NP79 307 aa19.51■□□□□ 0.71
USP40-212ENST00000473191 RAD50Q92878 1312 aa19.51■□□□□ 0.71
USP40-212ENST00000473191 A0A0U1RQG5 324 aaPredicted RBP19.5■□□□□ 0.71
USP40-212ENST00000473191 DCDC2CA8MYV0 355 aa19.5■□□□□ 0.71
USP40-212ENST00000473191 SGSM2O43147 1006 aa19.5■□□□□ 0.71
USP40-212ENST00000473191 IFIT1BQ5T764 474 aaKnown RBP19.5■□□□□ 0.71
USP40-212ENST00000473191 COPS5Q92905 334 aa19.5■□□□□ 0.71
USP40-212ENST00000473191 UBAC1Q9BSL1 405 aa19.5■□□□□ 0.71
USP40-212ENST00000473191 CNNM2Q9H8M5 875 aa19.5■□□□□ 0.71
USP40-212ENST00000473191 ADD3Q9UEY8 706 aaKnown RBP19.5■□□□□ 0.71
USP40-212ENST00000473191 PPP1R11O60927 126 aaPredicted RBP19.49■□□□□ 0.71
USP40-212ENST00000473191 PARP1P09874 1014 aaKnown RBP19.49■□□□□ 0.71
USP40-212ENST00000473191 EDNRBP24530 442 aa19.49■□□□□ 0.71
USP40-212ENST00000473191 DUSP28Q4G0W2 176 aa19.49■□□□□ 0.71
USP40-212ENST00000473191 ASPRV1Q53RT3 343 aa19.49■□□□□ 0.71
USP40-212ENST00000473191 CCDC178Q5BJE1 867 aa19.49■□□□□ 0.71
USP40-212ENST00000473191 TAAR1Q96RJ0 339 aa19.49■□□□□ 0.71
USP40-212ENST00000473191 WDR11Q9BZH6 1224 aa19.49■□□□□ 0.71
USP40-212ENST00000473191 PPP1R12CQ9BZL4 782 aa19.49■□□□□ 0.71
USP40-212ENST00000473191 AP5M1Q9H0R1 490 aa19.49■□□□□ 0.71
USP40-212ENST00000473191 MAD2L2Q9UI95 211 aa19.49■□□□□ 0.71
USP40-212ENST00000473191 UMODL1Q5DID0 1318 aa19.49■□□□□ 0.71
USP40-212ENST00000473191 RBM47A0AV96 593 aaKnown RBP19.48■□□□□ 0.71
USP40-212ENST00000473191 E7EWF7 191 aa19.48■□□□□ 0.71
USP40-212ENST00000473191 RBAK-RBAKDNI3L0D1 243 aa19.48■□□□□ 0.71
USP40-212ENST00000473191 OPLAHO14841 1288 aa19.48■□□□□ 0.71
USP40-212ENST00000473191 ARIH2O95376 493 aa19.48■□□□□ 0.71
USP40-212ENST00000473191 TIMP1P01033 207 aa19.48■□□□□ 0.71
USP40-212ENST00000473191 CD4P01730 458 aa19.48■□□□□ 0.71
USP40-212ENST00000473191 C16orf59Q7L2K0 433 aa19.48■□□□□ 0.71
USP40-212ENST00000473191 SLC43A3Q8NBI5 491 aa19.48■□□□□ 0.71
USP40-212ENST00000473191 GUCD1Q96NT3 240 aa19.48■□□□□ 0.71
USP40-212ENST00000473191 DHX16O60231 1041 aaKnown RBP19.47■□□□□ 0.71
USP40-212ENST00000473191 NT5C2P49902 561 aa19.47■□□□□ 0.71
USP40-212ENST00000473191 ANTXR2P58335 489 aa19.47■□□□□ 0.71
USP40-212ENST00000473191 FPGSQ05932 587 aa19.47■□□□□ 0.71
USP40-212ENST00000473191 ITGA7Q13683 1181 aa19.47■□□□□ 0.71
USP40-212ENST00000473191 SYTL5Q8TDW5 730 aaPredicted RBP19.47■□□□□ 0.71
USP40-212ENST00000473191 Q9Y3F1 56 aa19.47■□□□□ 0.71
USP40-212ENST00000473191 MYH6P13533 1939 aa19.47■□□□□ 0.71
USP40-212ENST00000473191 B4GALT4O60513 344 aa19.46■□□□□ 0.71
USP40-212ENST00000473191 PDE4DQ08499 809 aa19.46■□□□□ 0.71
USP40-212ENST00000473191 FAM109BQ6ICB4 259 aaPredicted RBP19.46■□□□□ 0.71
USP40-212ENST00000473191 DNERQ8NFT8 737 aa19.46■□□□□ 0.71
USP40-212ENST00000473191 RUFY2Q8WXA3 655 aa19.46■□□□□ 0.71
USP40-212ENST00000473191 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.46■□□□□ 0.71
USP40-212ENST00000473191 TRPV6Q9H1D0 765 aa19.46■□□□□ 0.71
USP40-212ENST00000473191 GPHNQ9NQX3 736 aaPredicted RBP19.46■□□□□ 0.71
USP40-212ENST00000473191 ABCB11O95342 1321 aa19.46■□□□□ 0.71
USP40-212ENST00000473191 MROH7Q68CQ1 1323 aa19.46■□□□□ 0.71
USP40-212ENST00000473191 CDH23Q9H251 3354 aa19.45■□□□□ 0.7
USP40-212ENST00000473191 PALM3A6NDB9 673 aaPredicted RBP19.45■□□□□ 0.7
USP40-212ENST00000473191 KLRF2D3W0D1 207 aa19.45■□□□□ 0.7
USP40-212ENST00000473191 ACRP10323 421 aa19.45■□□□□ 0.7
USP40-212ENST00000473191 CSF2RAP15509 400 aa19.45■□□□□ 0.7
USP40-212ENST00000473191 CYP2C18P33260 490 aa19.45■□□□□ 0.7
USP40-212ENST00000473191 MFSD5Q6N075 450 aa19.45■□□□□ 0.7
USP40-212ENST00000473191 FBXO11Q86XK2 927 aa19.45■□□□□ 0.7
USP40-212ENST00000473191 RGS22Q8NE09 1264 aa19.45■□□□□ 0.7
USP40-212ENST00000473191 OR6J1Q8NGC5 347 aa19.45■□□□□ 0.7
USP40-212ENST00000473191 MAP4K1Q92918 833 aa19.45■□□□□ 0.7
USP40-212ENST00000473191 MTMR8Q96EF0 704 aa19.45■□□□□ 0.7
USP40-212ENST00000473191 RNPC3Q96LT9 517 aaKnown RBP19.45■□□□□ 0.7
USP40-212ENST00000473191 PNMA2Q9UL42 364 aa19.45■□□□□ 0.7
USP40-212ENST00000473191 RBM8AQ9Y5S9 174 aaKnown RBP19.45■□□□□ 0.7
USP40-212ENST00000473191 U3KPZ7 1027 aaPredicted RBP19.45■□□□□ 0.7
USP40-212ENST00000473191 IFIT3O14879 490 aaKnown RBP19.44■□□□□ 0.7
USP40-212ENST00000473191 CYTH3O43739 400 aa19.44■□□□□ 0.7
USP40-212ENST00000473191 MYL3P08590 195 aa19.44■□□□□ 0.7
USP40-212ENST00000473191 PURAQ00577 322 aaKnown RBP19.44■□□□□ 0.7
USP40-212ENST00000473191 TTYH1Q9H313 450 aaPredicted RBP19.44■□□□□ 0.7
USP40-212ENST00000473191 EYSQ5T1H1 3165 aa19.44■□□□□ 0.7
USP40-212ENST00000473191 LOC102724159A0A0B4J2E5 919 aa19.43■□□□□ 0.7
USP40-212ENST00000473191 TRDNQ13061 729 aa19.43■□□□□ 0.7
USP40-212ENST00000473191 GRM4Q14833 912 aa19.43■□□□□ 0.7
USP40-212ENST00000473191 PPP2R5BQ15173 497 aa19.43■□□□□ 0.7
USP40-212ENST00000473191 PWP2Q15269 919 aaKnown RBP19.43■□□□□ 0.7
USP40-212ENST00000473191 SEPT14Q6ZU15 432 aa19.43■□□□□ 0.7
USP40-212ENST00000473191 HOMER1Q86YM7 354 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms