RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 MCF2L2Q86YR7 1114 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 FBXO16Q8IX29 292 aaPredicted RBP13.93□□□□□ -0.18
SYNE1-221ENST00000472563 AMNQ9BXJ7 453 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 PDGFCQ9NRA1 345 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 PRKAG2Q9UGJ0 569 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 MRPL11Q9Y3B7 192 aaKnown RBP13.93□□□□□ -0.18
SYNE1-221ENST00000472563 Q9Y3F1 56 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 ELP1O95163 1332 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 TRIOBPQ9H2D6 2365 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.92□□□□□ -0.18
SYNE1-221ENST00000472563 RBM47A0AV96 593 aaKnown RBP13.92□□□□□ -0.18
SYNE1-221ENST00000472563 B4DLN1 442 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 ZBTB5O15062 677 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 CTAGE5O15320 804 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 PRC1O43663 620 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 SMPD1P17405 629 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 MCM5P33992 734 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 MRPL12P52815 198 aaKnown RBP13.92□□□□□ -0.18
SYNE1-221ENST00000472563 TLE2Q04725 743 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 TRAF1Q13077 416 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 TMTC2Q8N394 836 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 GLT1D1Q96MS3 346 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 MAP3K14Q99558 947 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 RIOX1Q9H6W3 641 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 LY9Q9HBG7 655 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 STARD7Q9NQZ5 370 aa13.92□□□□□ -0.18
SYNE1-221ENST00000472563 DYNC1LI2O43237 492 aaPredicted RBP13.91□□□□□ -0.18
SYNE1-221ENST00000472563 NEFLP07196 543 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 ASGR1P07306 291 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 IRX5P78411 483 aaPredicted RBP13.91□□□□□ -0.18
SYNE1-221ENST00000472563 GHRHRQ02643 423 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 PDE4DQ08499 809 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 SLC35G1Q2M3R5 365 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 DUSP28Q4G0W2 176 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 RNF20Q5VTR2 975 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 ANKRD33Q7Z3H0 272 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 TLK2Q86UE8 772 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 SYTL5Q8TDW5 730 aaPredicted RBP13.91□□□□□ -0.18
SYNE1-221ENST00000472563 TBC1D5Q92609 795 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 TMEM87BQ96K49 555 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 TOX2Q96NM4 488 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 LBHD1Q9BQE6 289 aaPredicted RBP13.91□□□□□ -0.18
SYNE1-221ENST00000472563 UBE2OQ9C0C9 1292 aaKnown RBP13.91□□□□□ -0.18
SYNE1-221ENST00000472563 AP5M1Q9H0R1 490 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 PDLIM7Q9NR12 457 aa13.91□□□□□ -0.18
SYNE1-221ENST00000472563 LAMA4Q16363 1823 aa13.9□□□□□ -0.18
SYNE1-221ENST00000472563 DNAH12Q6ZR08 3092 aa13.9□□□□□ -0.18
SYNE1-221ENST00000472563 SH2B2O14492 632 aaPredicted RBP13.9□□□□□ -0.18
SYNE1-221ENST00000472563 PPP1R11O60927 126 aaPredicted RBP13.9□□□□□ -0.18
SYNE1-221ENST00000472563 CABYRO75952 493 aa13.9□□□□□ -0.18
SYNE1-221ENST00000472563 DDAH1O94760 285 aa13.9□□□□□ -0.18
SYNE1-221ENST00000472563 LIFRP42702 1097 aa13.9□□□□□ -0.18
SYNE1-221ENST00000472563 MDM2Q00987 491 aaPredicted RBP13.9□□□□□ -0.18
SYNE1-221ENST00000472563 FSCN1Q16658 493 aaKnown RBP13.9□□□□□ -0.18
SYNE1-221ENST00000472563 SAMD3Q8N6K7 520 aa13.9□□□□□ -0.18
SYNE1-221ENST00000472563 NSUN6Q8TEA1 469 aaKnown RBP13.9□□□□□ -0.18
SYNE1-221ENST00000472563 WDR11Q9BZH6 1224 aa13.9□□□□□ -0.18
SYNE1-221ENST00000472563 GPHNQ9NQX3 736 aaPredicted RBP13.9□□□□□ -0.18
SYNE1-221ENST00000472563 MAP3K20Q9NYL2 800 aaKnown RBP13.9□□□□□ -0.18
SYNE1-221ENST00000472563 PCDHA1Q9Y5I3 950 aa13.9□□□□□ -0.18
SYNE1-221ENST00000472563 PNMA6FA0A0J9YX94 578 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 TRIM43BA6NCK2 446 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 OPLAHO14841 1288 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 CYTH3O43739 400 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 ZEB2O60315 1214 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 SMARCA1P28370 1054 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 KIF5BP33176 963 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 CDK7P50613 346 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 BEX3Q00994 111 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 TSGA10IPQ3SY00 556 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 TMEM63BQ5T3F8 832 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 SH3RF1Q7Z6J0 888 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 TDHQ8IZJ6 230 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 ZNF654Q8IZM8 581 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 CTCFLQ8NI51 663 aaPredicted RBP13.89□□□□□ -0.19
SYNE1-221ENST00000472563 SCFD2Q8WU76 684 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 TRIM43Q96BQ3 446 aaPredicted RBP13.89□□□□□ -0.19
SYNE1-221ENST00000472563 TAAR1Q96RJ0 339 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 PIGSQ96S52 555 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 IWS1Q96ST2 819 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 RMDN3Q96TC7 470 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 PRDM5Q9NQX1 630 aaPredicted RBP13.89□□□□□ -0.19
SYNE1-221ENST00000472563 COL20A1Q9P218 1284 aa13.89□□□□□ -0.19
SYNE1-221ENST00000472563 A0A0U1RQG5 324 aaPredicted RBP13.88□□□□□ -0.19
SYNE1-221ENST00000472563 DCDC2CA8MYV0 355 aa13.88□□□□□ -0.19
SYNE1-221ENST00000472563 ARVCFO00192 962 aa13.88□□□□□ -0.19
SYNE1-221ENST00000472563 KIAA0355O15063 1070 aa13.88□□□□□ -0.19
SYNE1-221ENST00000472563 NKRFO15226 690 aaKnown RBP eCLIP13.88□□□□□ -0.19
SYNE1-221ENST00000472563 PQBP1O60828 265 aaKnown RBP13.88□□□□□ -0.19
SYNE1-221ENST00000472563 CLTBP09497 229 aa13.88□□□□□ -0.19
SYNE1-221ENST00000472563 HSD17B4P51659 736 aa13.88□□□□□ -0.19
SYNE1-221ENST00000472563 COL9A3Q14050 684 aaPredicted RBP13.88□□□□□ -0.19
SYNE1-221ENST00000472563 NFXL1Q6ZNB6 911 aa13.88□□□□□ -0.19
SYNE1-221ENST00000472563 HOMER1Q86YM7 354 aa13.88□□□□□ -0.19
SYNE1-221ENST00000472563 VTI1AQ96AJ9 217 aa13.88□□□□□ -0.19
SYNE1-221ENST00000472563 LZTS2Q9BRK4 669 aa13.88□□□□□ -0.19
SYNE1-221ENST00000472563 SPZ1Q9BXG8 430 aa13.88□□□□□ -0.19
SYNE1-221ENST00000472563 SEZ6LQ9BYH1 1024 aa13.88□□□□□ -0.19
SYNE1-221ENST00000472563 PCDH10Q9P2E7 1040 aa13.88□□□□□ -0.19
SYNE1-221ENST00000472563 CCDC69A6NI79 296 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms