RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TPTE2Q6XPS3 522 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 hCG_1984214I3L0E3 225 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 ARHGEF10O15013 1369 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 ALCAMQ13740 583 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 PIK3AP1Q6ZUJ8 805 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 BPIFA3Q9BQP9 254 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 MCF2LO15068 1137 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 SERPINI2O75830 405 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 DMP1Q13316 513 aaPredicted RBP14.44□□□□□ -0.1
COL6A3-209ENST00000472056 SPARCL1Q14515 664 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 RPS6KC1Q96S38 1066 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 WDR7Q9Y4E6 1490 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 TARSL2A2RTX5 802 aaKnown RBP14.44□□□□□ -0.1
COL6A3-209ENST00000472056 CRLF3Q8IUI8 442 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 TBC1D22AQ8WUA7 517 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 MTBPQ96DY7 904 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 PPCSQ9HAB8 311 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 ARPP21Q9UBL0 812 aaPredicted RBP14.44□□□□□ -0.1
COL6A3-209ENST00000472056 YTHDC2Q9H6S0 1430 aaKnown RBP14.44□□□□□ -0.1
COL6A3-209ENST00000472056 NEK8Q86SG6 692 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 RMDN2Q96LZ7 410 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 ZNF233A6NK53 670 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 MSH2P43246 934 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 RNASE9P60153 205 aaKnown RBP14.44□□□□□ -0.1
COL6A3-209ENST00000472056 CDR2Q01850 454 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 SENP1Q9P0U3 644 aa14.44□□□□□ -0.1
COL6A3-209ENST00000472056 DENND4BO75064 1496 aaPredicted RBP14.43□□□□□ -0.1
COL6A3-209ENST00000472056 GNGT2O14610 69 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 GPAA1O43292 621 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 EFCAB14O75071 495 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 EEF1B2P24534 225 aaKnown RBP14.43□□□□□ -0.1
COL6A3-209ENST00000472056 BFSP1Q12934 665 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 PFKFB2O60825 505 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 PNMA6AP0CW24 399 aaPredicted RBP14.43□□□□□ -0.1
COL6A3-209ENST00000472056 ANO5Q75V66 913 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 COPS6Q7L5N1 327 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 ATP8A2Q9NTI2 1148 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 IFNA8P32881 189 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 RARS2Q5T160 578 aaKnown RBP14.43□□□□□ -0.1
COL6A3-209ENST00000472056 ANKRD27Q96NW4 1050 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 BICC1Q9H694 974 aaKnown RBP14.43□□□□□ -0.1
COL6A3-209ENST00000472056 ATP5J2-PTCD1G3V325 749 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 IFNB1P01574 187 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 DHX38Q92620 1227 aaKnown RBP14.43□□□□□ -0.1
COL6A3-209ENST00000472056 PHKBQ93100 1093 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 DCAF5Q96JK2 942 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 GAP43P17677 238 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 MDM2Q00987 491 aaPredicted RBP14.43□□□□□ -0.1
COL6A3-209ENST00000472056 CASP8Q14790 479 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 SESTD1Q86VW0 696 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 TRIML2Q8N7C3 387 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 MYO1FO00160 1098 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 PFKFB1P16118 471 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 ANAPC5Q9UJX4 755 aa14.43□□□□□ -0.1
COL6A3-209ENST00000472056 GPTP24298 496 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 TNNI3KQ59H18 835 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 ATP6V0A1Q93050 837 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 FPGT-TNNI3KV9GXZ4 949 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 ECEL1O95672 775 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 RWDD2BP57060 319 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 PSMD2Q13200 908 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 SNX1Q13596 522 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 ZC3H18Q86VM9 953 aaKnown RBP14.42□□□□□ -0.1
COL6A3-209ENST00000472056 DDAH1O94760 285 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 ESRRAP11474 423 aaPredicted RBP14.42□□□□□ -0.1
COL6A3-209ENST00000472056 PPARGP37231 505 aaPredicted RBP14.42□□□□□ -0.1
COL6A3-209ENST00000472056 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.42□□□□□ -0.1
COL6A3-209ENST00000472056 KIF20BQ96Q89 1820 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 MYO1CO00159 1063 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 ECE1P42892 770 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 KRR1Q13601 381 aaKnown RBP14.42□□□□□ -0.1
COL6A3-209ENST00000472056 ICA1LQ8NDH6 482 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 TTC37Q6PGP7 1564 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 CWF19L2Q2TBE0 894 aaKnown RBP14.42□□□□□ -0.1
COL6A3-209ENST00000472056 KRT40Q6A162 431 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 CHEK2O96017 543 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 IRX5P78411 483 aaPredicted RBP14.42□□□□□ -0.1
COL6A3-209ENST00000472056 CABP7Q86V35 215 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 MAML3Q96JK9 1138 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 SEPT3Q9UH03 358 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 KMT5BQ4FZB7 885 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 MOV10L1Q9BXT6 1211 aaKnown RBP14.42□□□□□ -0.1
COL6A3-209ENST00000472056 ZMYND12Q9H0C1 365 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 RWDD2AQ9UIY3 292 aa14.42□□□□□ -0.1
COL6A3-209ENST00000472056 KRT10P13645 584 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 EXOC3L4Q17RC7 722 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 RPN1P04843 607 aaKnown RBP14.41□□□□□ -0.1
COL6A3-209ENST00000472056 ATP5JP18859 108 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 KCNJ6P48051 423 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 PTK2Q05397 1052 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 ZSWIM6Q9HCJ5 1215 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 PCDH11XQ9BZA7 1347 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 PCDH11YQ9BZA8 1340 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 RPSAP08865 295 aaKnown RBP14.41□□□□□ -0.1
COL6A3-209ENST00000472056 POLE2P56282 527 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 ZC3H12CQ9C0D7 883 aaKnown RBP14.41□□□□□ -0.1
COL6A3-209ENST00000472056 EYA2O00167 538 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 MMEP08473 750 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 BBS5Q8N3I7 341 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 C10orf88Q9H8K7 445 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms