RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 SNAI1O95863 264 aaPredicted RBP17.69■□□□□ 0.42
SDC3-203ENST00000471567 EN2P19622 333 aaPredicted RBP17.69■□□□□ 0.42
SDC3-203ENST00000471567 CALML3P27482 149 aa17.69■□□□□ 0.42
SDC3-203ENST00000471567 GHRHRQ02643 423 aa17.69■□□□□ 0.42
SDC3-203ENST00000471567 CMTR1Q8N1G2 835 aaKnown RBP17.69■□□□□ 0.42
SDC3-203ENST00000471567 TRPV1Q8NER1 839 aa17.69■□□□□ 0.42
SDC3-203ENST00000471567 DNERQ8NFT8 737 aa17.69■□□□□ 0.42
SDC3-203ENST00000471567 SEPT4O43236 478 aa17.68■□□□□ 0.42
SDC3-203ENST00000471567 CNGA1P29973 690 aa17.68■□□□□ 0.42
SDC3-203ENST00000471567 PDIA3P30101 505 aaKnown RBP17.68■□□□□ 0.42
SDC3-203ENST00000471567 CDC27P30260 824 aa17.68■□□□□ 0.42
SDC3-203ENST00000471567 FUT2Q10981 343 aa17.68■□□□□ 0.42
SDC3-203ENST00000471567 PRAMEF19Q5SWL8 479 aa17.68■□□□□ 0.42
SDC3-203ENST00000471567 SLC30A10Q6XR72 485 aa17.68■□□□□ 0.42
SDC3-203ENST00000471567 ARMCX2Q7L311 632 aa17.68■□□□□ 0.42
SDC3-203ENST00000471567 MORC4Q8TE76 937 aa17.68■□□□□ 0.42
SDC3-203ENST00000471567 PIBF1Q8WXW3 757 aa17.68■□□□□ 0.42
SDC3-203ENST00000471567 ZNF274Q96GC6 653 aaPredicted RBP17.68■□□□□ 0.42
SDC3-203ENST00000471567 ABHD16BQ9H3Z7 469 aa17.68■□□□□ 0.42
SDC3-203ENST00000471567 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.68■□□□□ 0.42
SDC3-203ENST00000471567 DDX20Q9UHI6 824 aaKnown RBP17.68■□□□□ 0.42
SDC3-203ENST00000471567 CENPFP49454 3210 aa17.67■□□□□ 0.42
SDC3-203ENST00000471567 OPLAHO14841 1288 aa17.67■□□□□ 0.42
SDC3-203ENST00000471567 TFRCP02786 760 aaKnown RBP17.67■□□□□ 0.42
SDC3-203ENST00000471567 ZNF865P0CJ78 1059 aaPredicted RBP17.67■□□□□ 0.42
SDC3-203ENST00000471567 HSD17B4P51659 736 aa17.67■□□□□ 0.42
SDC3-203ENST00000471567 ANKRD1Q15327 319 aa17.67■□□□□ 0.42
SDC3-203ENST00000471567 LHX8Q68G74 356 aa17.67■□□□□ 0.42
SDC3-203ENST00000471567 CCDC82Q8N4S0 544 aa17.67■□□□□ 0.42
SDC3-203ENST00000471567 SYTL5Q8TDW5 730 aaPredicted RBP17.67■□□□□ 0.42
SDC3-203ENST00000471567 TBC1D5Q92609 795 aa17.67■□□□□ 0.42
SDC3-203ENST00000471567 SHISA4Q96DD7 197 aa17.67■□□□□ 0.42
SDC3-203ENST00000471567 MPHOSPH6Q99547 160 aaKnown RBP17.67■□□□□ 0.42
SDC3-203ENST00000471567 OGDHLQ9ULD0 1010 aa17.67■□□□□ 0.42
SDC3-203ENST00000471567 ASTN1O14525 1302 aa17.67■□□□□ 0.42
SDC3-203ENST00000471567 CNTNAP5Q8WYK1 1306 aa17.67■□□□□ 0.42
SDC3-203ENST00000471567 B4DLN1 442 aa17.66■□□□□ 0.42
SDC3-203ENST00000471567 CFBP00751 764 aa17.66■□□□□ 0.42
SDC3-203ENST00000471567 ADD1P35611 737 aaKnown RBP17.66■□□□□ 0.42
SDC3-203ENST00000471567 ALDH5A1P51649 535 aaPredicted RBP17.66■□□□□ 0.42
SDC3-203ENST00000471567 MRPL12P52815 198 aaKnown RBP17.66■□□□□ 0.42
SDC3-203ENST00000471567 ACVR2BQ13705 512 aa17.66■□□□□ 0.42
SDC3-203ENST00000471567 ANKLE1Q8NAG6 615 aa17.66■□□□□ 0.42
SDC3-203ENST00000471567 PURBQ96QR8 312 aaKnown RBP17.66■□□□□ 0.42
SDC3-203ENST00000471567 GCOM1H8Y6P7 765 aaPredicted RBP17.65■□□□□ 0.42
SDC3-203ENST00000471567 POLR2MP0CAP2 368 aa17.65■□□□□ 0.42
SDC3-203ENST00000471567 AKR1A1P14550 325 aa17.65■□□□□ 0.42
SDC3-203ENST00000471567 C22orf23Q9BZE7 217 aa17.65■□□□□ 0.42
SDC3-203ENST00000471567 UPF2Q9HAU5 1272 aaKnown RBP17.65■□□□□ 0.42
SDC3-203ENST00000471567 RBM27Q9P2N5 1060 aaKnown RBP17.65■□□□□ 0.42
SDC3-203ENST00000471567 FAM184BQ9ULE4 1060 aa17.65■□□□□ 0.42
SDC3-203ENST00000471567 V9GY48 417 aaPredicted RBP17.65■□□□□ 0.42
SDC3-203ENST00000471567 hCG_1984214I3L0E3 225 aa17.64■□□□□ 0.41
SDC3-203ENST00000471567 EDNRBP24530 442 aa17.64■□□□□ 0.41
SDC3-203ENST00000471567 RBM25P49756 843 aaKnown RBP17.64■□□□□ 0.41
SDC3-203ENST00000471567 ZNF713Q8N859 430 aaPredicted RBP17.64■□□□□ 0.41
SDC3-203ENST00000471567 NSUN6Q8TEA1 469 aaKnown RBP17.64■□□□□ 0.41
SDC3-203ENST00000471567 IWS1Q96ST2 819 aa17.64■□□□□ 0.41
SDC3-203ENST00000471567 KATNBL1Q9H079 304 aa17.64■□□□□ 0.41
SDC3-203ENST00000471567 VTA1Q9NP79 307 aa17.64■□□□□ 0.41
SDC3-203ENST00000471567 COL20A1Q9P218 1284 aa17.64■□□□□ 0.41
SDC3-203ENST00000471567 ZHX1Q9UKY1 873 aaPredicted RBP17.64■□□□□ 0.41
SDC3-203ENST00000471567 LCTP09848 1927 aa17.64■□□□□ 0.41
SDC3-203ENST00000471567 hCG_1642624A0A1W2PR95 340 aa17.63■□□□□ 0.41
SDC3-203ENST00000471567 IFNAR1P17181 557 aa17.63■□□□□ 0.41
SDC3-203ENST00000471567 NEK4P51957 841 aa17.63■□□□□ 0.41
SDC3-203ENST00000471567 AK2P54819 239 aa17.63■□□□□ 0.41
SDC3-203ENST00000471567 NTRK3Q16288 839 aa17.63■□□□□ 0.41
SDC3-203ENST00000471567 TEX2Q8IWB9 1127 aa17.63■□□□□ 0.41
SDC3-203ENST00000471567 TAAR1Q96RJ0 339 aa17.63■□□□□ 0.41
SDC3-203ENST00000471567 RMDN3Q96TC7 470 aa17.63■□□□□ 0.41
SDC3-203ENST00000471567 PIK3CDO00329 1044 aa17.62■□□□□ 0.41
SDC3-203ENST00000471567 PRPF3O43395 683 aaKnown RBP17.62■□□□□ 0.41
SDC3-203ENST00000471567 FARP2O94887 1054 aaPredicted RBP17.62■□□□□ 0.41
SDC3-203ENST00000471567 RARBP10826 455 aa17.62■□□□□ 0.41
SDC3-203ENST00000471567 CCT2P78371 535 aaKnown RBP17.62■□□□□ 0.41
SDC3-203ENST00000471567 PDE4DQ08499 809 aa17.62■□□□□ 0.41
SDC3-203ENST00000471567 HEATR3Q7Z4Q2 680 aa17.62■□□□□ 0.41
SDC3-203ENST00000471567 UBE2Q1Q7Z7E8 422 aa17.62■□□□□ 0.41
SDC3-203ENST00000471567 CUL5Q93034 780 aa17.62■□□□□ 0.41
SDC3-203ENST00000471567 LARP6Q9BRS8 491 aaKnown RBP17.62■□□□□ 0.41
SDC3-203ENST00000471567 RNF26Q9BY78 433 aaPredicted RBP17.62■□□□□ 0.41
SDC3-203ENST00000471567 MCM3APO60318 1980 aa17.61■□□□□ 0.41
SDC3-203ENST00000471567 HOXA13P31271 388 aaPredicted RBP17.61■□□□□ 0.41
SDC3-203ENST00000471567 AKAP17AQ02040 695 aaKnown RBP17.61■□□□□ 0.41
SDC3-203ENST00000471567 MLLT1Q03111 559 aaPredicted RBP17.61■□□□□ 0.41
SDC3-203ENST00000471567 PFKFB3Q16875 520 aaPredicted RBP17.61■□□□□ 0.41
SDC3-203ENST00000471567 CCDC144BQ3MJ40 725 aa17.61■□□□□ 0.41
SDC3-203ENST00000471567 ARHGEF16Q5VV41 709 aa17.61■□□□□ 0.41
SDC3-203ENST00000471567 WWC2Q6AWC2 1192 aa17.61■□□□□ 0.41
SDC3-203ENST00000471567 IQSEC1Q6DN90 963 aa17.61■□□□□ 0.41
SDC3-203ENST00000471567 PPP1R18Q6NYC8 613 aa17.61■□□□□ 0.41
SDC3-203ENST00000471567 CPLX2Q6PUV4 134 aaKnown RBP17.61■□□□□ 0.41
SDC3-203ENST00000471567 ARRDC4Q8NCT1 418 aa17.61■□□□□ 0.41
SDC3-203ENST00000471567 IL27Q8NEV9 243 aa17.61■□□□□ 0.41
SDC3-203ENST00000471567 PSTPIP2Q9H939 334 aa17.61■□□□□ 0.41
SDC3-203ENST00000471567 NCOA5Q9HCD5 579 aaKnown RBP17.61■□□□□ 0.41
SDC3-203ENST00000471567 PXMP2Q9NR77 195 aa17.61■□□□□ 0.41
SDC3-203ENST00000471567 TPCN1Q9ULQ1 816 aa17.61■□□□□ 0.41
SDC3-203ENST00000471567 CPLX1O14810 134 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms