RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 SPDYE3A6NKU9 549 aa20.53■□□□□ 0.88
SMC4-211ENST00000469858 HOXA13P31271 388 aaPredicted RBP20.53■□□□□ 0.88
SMC4-211ENST00000469858 BACE1P56817 501 aa20.53■□□□□ 0.88
SMC4-211ENST00000469858 NLRP12P59046 1061 aa20.53■□□□□ 0.88
SMC4-211ENST00000469858 L3MBTL3Q96JM7 780 aaPredicted RBP20.53■□□□□ 0.88
SMC4-211ENST00000469858 PPP1R9BQ96SB3 815 aa20.53■□□□□ 0.88
SMC4-211ENST00000469858 P2RX7Q99572 595 aaKnown RBP20.53■□□□□ 0.88
SMC4-211ENST00000469858 DDX25Q9UHL0 483 aaKnown RBP20.53■□□□□ 0.88
SMC4-211ENST00000469858 TXKP42681 527 aa20.52■□□□□ 0.88
SMC4-211ENST00000469858 PLCB2Q00722 1185 aa20.52■□□□□ 0.88
SMC4-211ENST00000469858 MCTP2Q6DN12 878 aa20.52■□□□□ 0.88
SMC4-211ENST00000469858 IQUBQ8NA54 791 aa20.52■□□□□ 0.88
SMC4-211ENST00000469858 PRPF38AQ8NAV1 312 aaKnown RBP20.52■□□□□ 0.88
SMC4-211ENST00000469858 MTMR9Q96QG7 549 aa20.52■□□□□ 0.88
SMC4-211ENST00000469858 PYM1Q9BRP8 204 aaKnown RBP20.52■□□□□ 0.88
SMC4-211ENST00000469858 PARP14Q460N5 1801 aa20.52■□□□□ 0.88
SMC4-211ENST00000469858 FLOT1O75955 427 aa20.52■□□□□ 0.87
SMC4-211ENST00000469858 GCFC2P16383 781 aaKnown RBP20.52■□□□□ 0.87
SMC4-211ENST00000469858 UBA7P41226 1012 aa20.52■□□□□ 0.87
SMC4-211ENST00000469858 TECP42680 631 aa20.52■□□□□ 0.87
SMC4-211ENST00000469858 AFMP43652 599 aa20.52■□□□□ 0.87
SMC4-211ENST00000469858 KARSQ15046 597 aaKnown RBP20.52■□□□□ 0.87
SMC4-211ENST00000469858 E2F4Q16254 413 aa20.52■□□□□ 0.87
SMC4-211ENST00000469858 KRT26Q7Z3Y9 468 aa20.52■□□□□ 0.87
SMC4-211ENST00000469858 LDHDQ86WU2 507 aa20.52■□□□□ 0.87
SMC4-211ENST00000469858 RASSF8Q8NHQ8 419 aa20.52■□□□□ 0.87
SMC4-211ENST00000469858 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.52■□□□□ 0.87
SMC4-211ENST00000469858 NAT10Q9H0A0 1025 aaKnown RBP20.52■□□□□ 0.87
SMC4-211ENST00000469858 RPAP3Q9H6T3 665 aaPredicted RBP20.52■□□□□ 0.87
SMC4-211ENST00000469858 OTOFQ9HC10 1997 aa20.51■□□□□ 0.87
SMC4-211ENST00000469858 USP2O75604 605 aaPredicted RBP20.51■□□□□ 0.87
SMC4-211ENST00000469858 CFBP00751 764 aa20.51■□□□□ 0.87
SMC4-211ENST00000469858 EPHX2P34913 555 aa20.51■□□□□ 0.87
SMC4-211ENST00000469858 AK8Q96MA6 479 aa20.51■□□□□ 0.87
SMC4-211ENST00000469858 NAP1L4Q99733 375 aaKnown RBP20.51■□□□□ 0.87
SMC4-211ENST00000469858 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.51■□□□□ 0.87
SMC4-211ENST00000469858 MRPL11Q9Y3B7 192 aaKnown RBP20.51■□□□□ 0.87
SMC4-211ENST00000469858 PIK3CDO00329 1044 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 FOSP01100 380 aaPredicted RBP20.5■□□□□ 0.87
SMC4-211ENST00000469858 ARHGAP4P98171 946 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 IQCB1Q15051 598 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 NOL9Q5SY16 702 aaKnown RBP20.5■□□□□ 0.87
SMC4-211ENST00000469858 SMARCE1Q969G3 411 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 PAGE5Q96GU1 130 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 DISC1Q9NRI5 854 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 CCPG1Q9ULG6 757 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 STAT6P42226 847 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 USP11P51784 963 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 HMGCS2P54868 508 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 USP50Q70EL3 339 aaPredicted RBP20.5■□□□□ 0.87
SMC4-211ENST00000469858 FCHSD1Q86WN1 690 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 PDLIM2Q96JY6 352 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 AGBL1Q96MI9 1066 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 CCSER1Q9C0I3 900 aa20.5■□□□□ 0.87
SMC4-211ENST00000469858 ABCB11O95342 1321 aa20.49■□□□□ 0.87
SMC4-211ENST00000469858 ICAM1P05362 532 aa20.49■□□□□ 0.87
SMC4-211ENST00000469858 TMEM266Q2M3C6 531 aa20.49■□□□□ 0.87
SMC4-211ENST00000469858 PDXDC2PQ6P474 469 aa20.49■□□□□ 0.87
SMC4-211ENST00000469858 SH3RF1Q7Z6J0 888 aa20.49■□□□□ 0.87
SMC4-211ENST00000469858 TBC1D5Q92609 795 aa20.49■□□□□ 0.87
SMC4-211ENST00000469858 STAMQ92783 540 aa20.49■□□□□ 0.87
SMC4-211ENST00000469858 ZNF536O15090 1300 aa20.49■□□□□ 0.87
SMC4-211ENST00000469858 PAPPA2Q9BXP8 1791 aa20.49■□□□□ 0.87
SMC4-211ENST00000469858 WDR90Q96KV7 1748 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 GLTPD2A6NH11 291 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 BECN2A8MW95 431 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 GOLGA6L19H0YKK7 550 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 GCOM1H8Y6P7 765 aaPredicted RBP20.48■□□□□ 0.87
SMC4-211ENST00000469858 POLR2MP0CAP2 368 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 SREBF1P36956 1147 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 CABP7Q86V35 215 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 CPXCR1Q8N123 301 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 IGSF22Q8N9C0 903 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 CRYGNQ8WXF5 182 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 CCDC39Q9UFE4 941 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 MAN1B1Q9UKM7 699 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 PPP1R9AQ9ULJ8 1098 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 AP5Z1O43299 807 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 PPP1R12BO60237 982 aaPredicted RBP20.48■□□□□ 0.87
SMC4-211ENST00000469858 MARCH6O60337 910 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 GRIN3BO60391 1043 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 ADCY5O95622 1261 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 CASP1P29466 404 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 FXR2P51116 673 aaKnown RBP eCLIP20.48■□□□□ 0.872e-10■■■■■ 37.2
SMC4-211ENST00000469858 VGLL4Q14135 290 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 NT5DC1Q5TFE4 455 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 RRAGBQ5VZM2 374 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 DHX40Q8IX18 779 aaKnown RBP20.48■□□□□ 0.87
SMC4-211ENST00000469858 AOPEPQ8N6M6 819 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 PLIN2Q99541 437 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 SCN4AP35499 1836 aa20.48■□□□□ 0.87
SMC4-211ENST00000469858 ZC3H4Q9UPT8 1303 aaKnown RBP20.48■□□□□ 0.87
SMC4-211ENST00000469858 C19orf81C9J6K1 198 aa20.47■□□□□ 0.87
SMC4-211ENST00000469858 SMC2O95347 1197 aa20.47■□□□□ 0.87
SMC4-211ENST00000469858 SARSP49591 514 aaKnown RBP20.47■□□□□ 0.87
SMC4-211ENST00000469858 MAP3K9P80192 1104 aa20.47■□□□□ 0.87
SMC4-211ENST00000469858 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.47■□□□□ 0.87
SMC4-211ENST00000469858 HAS1Q92839 578 aa20.47■□□□□ 0.87
SMC4-211ENST00000469858 TTC12Q9H892 705 aaPredicted RBP20.47■□□□□ 0.87
SMC4-211ENST00000469858 SLC38A10Q9HBR0 1119 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms