RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 MYH6P13533 1939 aa24.29■■□□□ 1.48
COL6A1-203ENST00000466285 REV3LO60673 3130 aa24.28■■□□□ 1.48
COL6A1-203ENST00000466285 TRIM6-TRIM34B2RNG4 842 aa24.28■■□□□ 1.48
COL6A1-203ENST00000466285 GOLGA8HP0CJ92 632 aa24.28■■□□□ 1.48
COL6A1-203ENST00000466285 ZNF543Q08ER8 600 aa24.28■■□□□ 1.48
COL6A1-203ENST00000466285 ITGA7Q13683 1181 aa24.28■■□□□ 1.48
COL6A1-203ENST00000466285 SMC5Q8IY18 1101 aa24.28■■□□□ 1.48
COL6A1-203ENST00000466285 RILPL2Q969X0 211 aa24.28■■□□□ 1.48
COL6A1-203ENST00000466285 PBX4Q9BYU1 374 aa24.28■■□□□ 1.48
COL6A1-203ENST00000466285 TCP11L1Q9NUJ3 509 aa24.28■■□□□ 1.48
COL6A1-203ENST00000466285 ZBTB47Q9UFB7 747 aaPredicted RBP24.28■■□□□ 1.48
COL6A1-203ENST00000466285 PTPDC1A2A3K4 754 aa24.27■■□□□ 1.48
COL6A1-203ENST00000466285 SNHG28P0DPA3 235 aa24.27■■□□□ 1.48
COL6A1-203ENST00000466285 CALML3P27482 149 aa24.27■■□□□ 1.48
COL6A1-203ENST00000466285 PPIGQ13427 754 aaKnown RBP eCLIP24.27■■□□□ 1.48
COL6A1-203ENST00000466285 AKNAD1Q5T1N1 836 aa24.27■■□□□ 1.48
COL6A1-203ENST00000466285 PLEKHM2Q8IWE5 1019 aa24.27■■□□□ 1.48
COL6A1-203ENST00000466285 YTHDC1Q96MU7 727 aaKnown RBP24.27■■□□□ 1.48
COL6A1-203ENST00000466285 IL25Q9H293 177 aa24.27■■□□□ 1.48
COL6A1-203ENST00000466285 VTA1Q9NP79 307 aa24.27■■□□□ 1.48
COL6A1-203ENST00000466285 CCL23P55773 120 aa24.26■■□□□ 1.47
COL6A1-203ENST00000466285 KIAA1211Q6ZU35 1233 aa24.26■■□□□ 1.47
COL6A1-203ENST00000466285 NOC4LQ9BVI4 516 aaKnown RBP24.26■■□□□ 1.47
COL6A1-203ENST00000466285 AP5M1Q9H0R1 490 aa24.26■■□□□ 1.47
COL6A1-203ENST00000466285 MYO9BQ13459 2157 aa24.25■■□□□ 1.47
COL6A1-203ENST00000466285 TMEM265A0A087WTH1 108 aa24.25■■□□□ 1.47
COL6A1-203ENST00000466285 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.25■■□□□ 1.47
COL6A1-203ENST00000466285 HSFX3A0A1B0GWH4 333 aaPredicted RBP24.25■■□□□ 1.47
COL6A1-203ENST00000466285 SDSP20132 328 aa24.25■■□□□ 1.47
COL6A1-203ENST00000466285 COPS5Q92905 334 aa24.25■■□□□ 1.47
COL6A1-203ENST00000466285 TIFAQ96CG3 184 aa24.25■■□□□ 1.47
COL6A1-203ENST00000466285 HIPK3Q9H422 1215 aa24.25■■□□□ 1.47
COL6A1-203ENST00000466285 ZNF576Q9H609 170 aa24.25■■□□□ 1.47
COL6A1-203ENST00000466285 PTPRSQ13332 1948 aa24.24■■□□□ 1.47
COL6A1-203ENST00000466285 TLR3O15455 904 aaKnown RBP24.24■■□□□ 1.47
COL6A1-203ENST00000466285 DUSP28Q4G0W2 176 aa24.24■■□□□ 1.47
COL6A1-203ENST00000466285 IQSEC1Q6DN90 963 aa24.24■■□□□ 1.47
COL6A1-203ENST00000466285 TMEM199Q8N511 208 aa24.24■■□□□ 1.47
COL6A1-203ENST00000466285 IL23AQ9NPF7 189 aa24.24■■□□□ 1.47
COL6A1-203ENST00000466285 PRDM6Q9NQX0 595 aa24.24■■□□□ 1.47
COL6A1-203ENST00000466285 TRMT13Q9NUP7 481 aaKnown RBP24.24■■□□□ 1.47
COL6A1-203ENST00000466285 KIAA1217Q5T5P2 1943 aa24.23■■□□□ 1.47
COL6A1-203ENST00000466285 RPS6P62753 249 aaKnown RBP24.23■■□□□ 1.47
COL6A1-203ENST00000466285 USH1GQ495M9 461 aa24.23■■□□□ 1.47
COL6A1-203ENST00000466285 MFSD6Q6ZSS7 791 aa24.23■■□□□ 1.47
COL6A1-203ENST00000466285 EXOC6Q8TAG9 804 aa24.23■■□□□ 1.47
COL6A1-203ENST00000466285 SCLYQ96I15 445 aa24.23■■□□□ 1.47
COL6A1-203ENST00000466285 UBA5Q9GZZ9 404 aa24.23■■□□□ 1.47
COL6A1-203ENST00000466285 YBX2Q9Y2T7 364 aaKnown RBP24.23■■□□□ 1.47
COL6A1-203ENST00000466285 ARIH2O95376 493 aa24.22■■□□□ 1.47
COL6A1-203ENST00000466285 CYP2C9P11712 490 aa24.22■■□□□ 1.47
COL6A1-203ENST00000466285 EDNRBP24530 442 aa24.22■■□□□ 1.47
COL6A1-203ENST00000466285 PURAQ00577 322 aaKnown RBP24.22■■□□□ 1.47
COL6A1-203ENST00000466285 PSRC1Q6PGN9 363 aaPredicted RBP24.22■■□□□ 1.47
COL6A1-203ENST00000466285 RNF207Q6ZRF8 634 aa24.22■■□□□ 1.47
COL6A1-203ENST00000466285 CHD1LQ86WJ1 897 aa24.22■■□□□ 1.47
COL6A1-203ENST00000466285 TBC1D5Q92609 795 aa24.22■■□□□ 1.47
COL6A1-203ENST00000466285 WDR11Q9BZH6 1224 aa24.22■■□□□ 1.47
COL6A1-203ENST00000466285 COL20A1Q9P218 1284 aa24.22■■□□□ 1.47
COL6A1-203ENST00000466285 MUC3AQ02505 3323 aa24.22■■□□□ 1.47
COL6A1-203ENST00000466285 RBM47A0AV96 593 aaKnown RBP24.21■■□□□ 1.47
COL6A1-203ENST00000466285 CWC27Q6UX04 472 aaKnown RBP24.21■■□□□ 1.47
COL6A1-203ENST00000466285 ALDH8A1Q9H2A2 487 aaPredicted RBP24.21■■□□□ 1.47
COL6A1-203ENST00000466285 TTC28Q96AY4 2481 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 WDR19Q8NEZ3 1342 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 B4E1Z4 1266 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 KDM4AO75164 1064 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 CABYRO75952 493 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 MYL3P08590 195 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 NUCB1Q02818 461 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 OTOP2Q7RTS6 562 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 OR6J1Q8NGC5 347 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 HERVK_113Q902F9 699 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 PRDM12Q9H4Q4 367 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 Q9Y3F1 56 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 TET1Q8NFU7 2136 aa24.2■■□□□ 1.46
COL6A1-203ENST00000466285 ADGRE1Q14246 886 aa24.19■■□□□ 1.46
COL6A1-203ENST00000466285 NKX2-4Q9H2Z4 354 aa24.19■■□□□ 1.46
COL6A1-203ENST00000466285 ADD3Q9UEY8 706 aaKnown RBP24.19■■□□□ 1.46
COL6A1-203ENST00000466285 MYOGP15173 224 aa24.18■■□□□ 1.46
COL6A1-203ENST00000466285 RABGGTBP53611 331 aa24.18■■□□□ 1.46
COL6A1-203ENST00000466285 CDC37Q16543 378 aaPredicted RBP24.18■■□□□ 1.46
COL6A1-203ENST00000466285 OSBPL3Q9H4L5 887 aa24.18■■□□□ 1.46
COL6A1-203ENST00000466285 TNKSO95271 1327 aa24.17■■□□□ 1.46
COL6A1-203ENST00000466285 TRIP12Q14669 1992 aaPredicted RBP24.17■■□□□ 1.46
COL6A1-203ENST00000466285 ENAHQ8N8S7 591 aaPredicted RBP24.17■■□□□ 1.46
COL6A1-203ENST00000466285 PNMA1Q8ND90 353 aa24.17■■□□□ 1.46
COL6A1-203ENST00000466285 ESR2Q92731 530 aa24.17■■□□□ 1.46
COL6A1-203ENST00000466285 TTC14Q96N46 770 aa24.17■■□□□ 1.46
COL6A1-203ENST00000466285 ZEB2O60315 1214 aa24.16■■□□□ 1.46
COL6A1-203ENST00000466285 PDE4DQ08499 809 aa24.16■■□□□ 1.46
COL6A1-203ENST00000466285 PPP2R5BQ15173 497 aa24.16■■□□□ 1.46
COL6A1-203ENST00000466285 ZNF213O14771 459 aa24.15■■□□□ 1.46
COL6A1-203ENST00000466285 FGBP02675 491 aa24.15■■□□□ 1.46
COL6A1-203ENST00000466285 PCP11498 1178 aaKnown RBP24.15■■□□□ 1.46
COL6A1-203ENST00000466285 PDE4AP27815 886 aa24.15■■□□□ 1.46
COL6A1-203ENST00000466285 TTLL4Q14679 1199 aa24.15■■□□□ 1.46
COL6A1-203ENST00000466285 NBPF20Q3BBV1 942 aa24.15■■□□□ 1.46
COL6A1-203ENST00000466285 TICAM2Q86XR7 235 aa24.15■■□□□ 1.46
COL6A1-203ENST00000466285 ADGRF4Q8IZF3 695 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms