RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 TMEM106CQ9BVX2 250 aa23.52■■□□□ 1.36
SKA3-205ENST00000465471 SEC63Q9UGP8 760 aaKnown RBP23.52■■□□□ 1.36
SKA3-205ENST00000465471 CCND3P30281 292 aaPredicted RBP23.51■■□□□ 1.35
SKA3-205ENST00000465471 HSD17B4P51659 736 aa23.51■■□□□ 1.35
SKA3-205ENST00000465471 AK2P54819 239 aa23.51■■□□□ 1.35
SKA3-205ENST00000465471 SOX10P56693 466 aa23.51■■□□□ 1.35
SKA3-205ENST00000465471 NTRK3Q16288 839 aa23.51■■□□□ 1.35
SKA3-205ENST00000465471 CCDC82Q8N4S0 544 aa23.51■■□□□ 1.35
SKA3-205ENST00000465471 MORC4Q8TE76 937 aa23.51■■□□□ 1.35
SKA3-205ENST00000465471 PIBF1Q8WXW3 757 aa23.51■■□□□ 1.35
SKA3-205ENST00000465471 TBC1D5Q92609 795 aa23.51■■□□□ 1.35
SKA3-205ENST00000465471 PURBQ96QR8 312 aaKnown RBP23.51■■□□□ 1.35
SKA3-205ENST00000465471 LOC102724159A0A0B4J2E5 919 aa23.5■■□□□ 1.35
SKA3-205ENST00000465471 SNAI1O95863 264 aaPredicted RBP23.5■■□□□ 1.35
SKA3-205ENST00000465471 GJA8P48165 433 aa23.5■■□□□ 1.35
SKA3-205ENST00000465471 PWP2Q15269 919 aaKnown RBP23.5■■□□□ 1.35
SKA3-205ENST00000465471 ANKRD1Q15327 319 aa23.5■■□□□ 1.35
SKA3-205ENST00000465471 IFFO2Q5TF58 517 aa23.5■■□□□ 1.35
SKA3-205ENST00000465471 SAMD3Q8N6K7 520 aa23.5■■□□□ 1.35
SKA3-205ENST00000465471 BACH2Q9BYV9 841 aa23.5■■□□□ 1.35
SKA3-205ENST00000465471 MAP3K20Q9NYL2 800 aaKnown RBP23.5■■□□□ 1.35
SKA3-205ENST00000465471 hCG_1642624A0A1W2PR95 340 aa23.49■■□□□ 1.35
SKA3-205ENST00000465471 CALML3P27482 149 aa23.49■■□□□ 1.35
SKA3-205ENST00000465471 NEK4P51957 841 aa23.49■■□□□ 1.35
SKA3-205ENST00000465471 ARMCX2Q7L311 632 aa23.49■■□□□ 1.35
SKA3-205ENST00000465471 DNERQ8NFT8 737 aa23.49■■□□□ 1.35
SKA3-205ENST00000465471 SYTL5Q8TDW5 730 aaPredicted RBP23.49■■□□□ 1.35
SKA3-205ENST00000465471 SHISA4Q96DD7 197 aa23.49■■□□□ 1.35
SKA3-205ENST00000465471 LARP6Q9BRS8 491 aaKnown RBP23.49■■□□□ 1.35
SKA3-205ENST00000465471 KATNBL1Q9H079 304 aa23.49■■□□□ 1.35
SKA3-205ENST00000465471 COL20A1Q9P218 1284 aa23.49■■□□□ 1.35
SKA3-205ENST00000465471 TPCN1Q9ULQ1 816 aa23.49■■□□□ 1.35
SKA3-205ENST00000465471 ASB14A6NK59 587 aa23.48■■□□□ 1.35
SKA3-205ENST00000465471 ZNF865P0CJ78 1059 aaPredicted RBP23.48■■□□□ 1.35
SKA3-205ENST00000465471 ALDH5A1P51649 535 aaPredicted RBP23.48■■□□□ 1.35
SKA3-205ENST00000465471 U2AF1L4Q8WU68 220 aaKnown RBP23.48■■□□□ 1.35
SKA3-205ENST00000465471 DEFB118Q96PH6 123 aa23.48■■□□□ 1.35
SKA3-205ENST00000465471 CRISPLD2Q9H0B8 497 aa23.48■■□□□ 1.35
SKA3-205ENST00000465471 NCOA5Q9HCD5 579 aaKnown RBP23.48■■□□□ 1.35
SKA3-205ENST00000465471 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.48■■□□□ 1.35
SKA3-205ENST00000465471 ADD3Q9UEY8 706 aaKnown RBP23.48■■□□□ 1.35
SKA3-205ENST00000465471 CAPN15O75808 1086 aa23.47■■□□□ 1.35
SKA3-205ENST00000465471 SGPL1O95470 568 aa23.47■■□□□ 1.35
SKA3-205ENST00000465471 IFNAR1P17181 557 aa23.47■■□□□ 1.35
SKA3-205ENST00000465471 EDNRBP24530 442 aa23.47■■□□□ 1.35
SKA3-205ENST00000465471 CCT2P78371 535 aaKnown RBP23.47■■□□□ 1.35
SKA3-205ENST00000465471 PRAMEF19Q5SWL8 479 aa23.47■■□□□ 1.35
SKA3-205ENST00000465471 LHX8Q68G74 356 aa23.47■■□□□ 1.35
SKA3-205ENST00000465471 TBC1D32Q96NH3 1257 aa23.47■■□□□ 1.35
SKA3-205ENST00000465471 UPF2Q9HAU5 1272 aaKnown RBP23.47■■□□□ 1.35
SKA3-205ENST00000465471 V9GY48 417 aaPredicted RBP23.47■■□□□ 1.35
SKA3-205ENST00000465471 SEPT4O43236 478 aa23.46■■□□□ 1.35
SKA3-205ENST00000465471 CFBP00751 764 aa23.46■■□□□ 1.35
SKA3-205ENST00000465471 CAPN2P17655 700 aa23.46■■□□□ 1.35
SKA3-205ENST00000465471 WWC2Q6AWC2 1192 aa23.46■■□□□ 1.35
SKA3-205ENST00000465471 ABHD16BQ9H3Z7 469 aa23.46■■□□□ 1.35
SKA3-205ENST00000465471 CNPY2Q9Y2B0 182 aa23.46■■□□□ 1.35
SKA3-205ENST00000465471 hCG_1984214I3L0E3 225 aa23.45■■□□□ 1.34
SKA3-205ENST00000465471 PRPF3O43395 683 aaKnown RBP23.45■■□□□ 1.34
SKA3-205ENST00000465471 PFKFB2O60825 505 aa23.45■■□□□ 1.34
SKA3-205ENST00000465471 EN2P19622 333 aaPredicted RBP23.45■■□□□ 1.34
SKA3-205ENST00000465471 RGS19P49795 217 aa23.45■■□□□ 1.34
SKA3-205ENST00000465471 ZNF713Q8N859 430 aaPredicted RBP23.45■■□□□ 1.34
SKA3-205ENST00000465471 GPKOWQ92917 476 aaPredicted RBP eCLIP23.45■■□□□ 1.34
SKA3-205ENST00000465471 RNF26Q9BY78 433 aaPredicted RBP23.45■■□□□ 1.34
SKA3-205ENST00000465471 RBM27Q9P2N5 1060 aaKnown RBP23.45■■□□□ 1.34
SKA3-205ENST00000465471 DDX20Q9UHI6 824 aaKnown RBP23.45■■□□□ 1.34
SKA3-205ENST00000465471 DDX49Q9Y6V7 483 aaKnown RBP23.45■■□□□ 1.34
SKA3-205ENST00000465471 PIK3CDO00329 1044 aa23.44■■□□□ 1.34
SKA3-205ENST00000465471 MSCO60682 206 aa23.44■■□□□ 1.34
SKA3-205ENST00000465471 SCRN1Q12765 414 aa23.44■■□□□ 1.34
SKA3-205ENST00000465471 ACVR2BQ13705 512 aa23.44■■□□□ 1.34
SKA3-205ENST00000465471 PKN1Q16512 942 aa23.44■■□□□ 1.34
SKA3-205ENST00000465471 PFKFB3Q16875 520 aaPredicted RBP23.44■■□□□ 1.34
SKA3-205ENST00000465471 TYW1BQ6NUM6 668 aa23.44■■□□□ 1.34
SKA3-205ENST00000465471 PPP1R18Q6NYC8 613 aa23.44■■□□□ 1.34
SKA3-205ENST00000465471 HEATR3Q7Z4Q2 680 aa23.44■■□□□ 1.34
SKA3-205ENST00000465471 TAAR1Q96RJ0 339 aa23.44■■□□□ 1.34
SKA3-205ENST00000465471 OGDHLQ9ULD0 1010 aa23.44■■□□□ 1.34
SKA3-205ENST00000465471 GCOM1H8Y6P7 765 aaPredicted RBP23.43■■□□□ 1.34
SKA3-205ENST00000465471 STXBP3O00186 592 aa23.43■■□□□ 1.34
SKA3-205ENST00000465471 MEIS2O14770 477 aa23.43■■□□□ 1.34
SKA3-205ENST00000465471 LARGE1O95461 756 aa23.43■■□□□ 1.34
SKA3-205ENST00000465471 POLR2MP0CAP2 368 aa23.43■■□□□ 1.34
SKA3-205ENST00000465471 HOXA13P31271 388 aaPredicted RBP23.43■■□□□ 1.34
SKA3-205ENST00000465471 STK3Q13188 491 aa23.43■■□□□ 1.34
SKA3-205ENST00000465471 PHKBQ93100 1093 aa23.43■■□□□ 1.34
SKA3-205ENST00000465471 BARHL2Q9NY43 387 aa23.43■■□□□ 1.34
SKA3-205ENST00000465471 FRMPD4Q14CM0 1322 aa23.42■■□□□ 1.34
SKA3-205ENST00000465471 SCG2P13521 617 aa23.42■■□□□ 1.34
SKA3-205ENST00000465471 CNGA1P29973 690 aa23.42■■□□□ 1.34
SKA3-205ENST00000465471 RABEP1Q15276 862 aa23.42■■□□□ 1.34
SKA3-205ENST00000465471 ME3Q16798 604 aa23.42■■□□□ 1.34
SKA3-205ENST00000465471 TEX2Q8IWB9 1127 aa23.42■■□□□ 1.34
SKA3-205ENST00000465471 NSUN6Q8TEA1 469 aaKnown RBP23.42■■□□□ 1.34
SKA3-205ENST00000465471 RMDN3Q96TC7 470 aa23.42■■□□□ 1.34
SKA3-205ENST00000465471 SLKQ9H2G2 1235 aaPredicted RBP23.42■■□□□ 1.34
SKA3-205ENST00000465471 VTA1Q9NP79 307 aa23.42■■□□□ 1.34
SKA3-205ENST00000465471 PXMP2Q9NR77 195 aa23.42■■□□□ 1.34
SKA3-205ENST00000465471 ZHX1Q9UKY1 873 aaPredicted RBP23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms