RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 CFBP00751 764 aa26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 CNGA1P29973 690 aa26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 CCND3P30281 292 aaPredicted RBP26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 RBM25P49756 843 aaKnown RBP26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 AK2P54819 239 aa26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 STK3Q13188 491 aa26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 PURBQ96QR8 312 aaKnown RBP26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 MAF1Q9H063 256 aa26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 PAK6Q9NQU5 681 aaPredicted RBP26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 ADD3Q9UEY8 706 aaKnown RBP26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 CNPY2Q9Y2B0 182 aa26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 GJB1P08034 283 aa26.39■■□□□ 1.82
CCDC28B-203ENST00000461819 CYBAP13498 195 aa26.39■■□□□ 1.82
CCDC28B-203ENST00000461819 MAMDC4Q6UXC1 1216 aa26.39■■□□□ 1.82
CCDC28B-203ENST00000461819 NOL8Q76FK4 1167 aaKnown RBP26.39■■□□□ 1.82
CCDC28B-203ENST00000461819 DEFB118Q96PH6 123 aa26.39■■□□□ 1.82
CCDC28B-203ENST00000461819 NCOA5Q9HCD5 579 aaKnown RBP26.39■■□□□ 1.82
CCDC28B-203ENST00000461819 ASB14A6NK59 587 aa26.38■■□□□ 1.81
CCDC28B-203ENST00000461819 FUT2Q10981 343 aa26.38■■□□□ 1.81
CCDC28B-203ENST00000461819 PRAMEF19Q5SWL8 479 aa26.38■■□□□ 1.81
CCDC28B-203ENST00000461819 ARMCX2Q7L311 632 aa26.38■■□□□ 1.81
CCDC28B-203ENST00000461819 HEATR3Q7Z4Q2 680 aa26.38■■□□□ 1.81
CCDC28B-203ENST00000461819 TBC1D5Q92609 795 aa26.38■■□□□ 1.81
CCDC28B-203ENST00000461819 V9GY48 417 aaPredicted RBP26.38■■□□□ 1.81
CCDC28B-203ENST00000461819 OPLAHO14841 1288 aa26.37■■□□□ 1.81
CCDC28B-203ENST00000461819 TRPV1Q8NER1 839 aa26.37■■□□□ 1.81
CCDC28B-203ENST00000461819 MPHOSPH6Q99547 160 aaKnown RBP26.37■■□□□ 1.81
CCDC28B-203ENST00000461819 CDKN2AIPQ9NXV6 580 aaPredicted RBP26.37■■□□□ 1.81
CCDC28B-203ENST00000461819 NRBP1Q9UHY1 535 aa26.37■■□□□ 1.81
CCDC28B-203ENST00000461819 ASTN1O14525 1302 aa26.37■■□□□ 1.81
CCDC28B-203ENST00000461819 CPLX1O14810 134 aa26.36■■□□□ 1.81
CCDC28B-203ENST00000461819 ALDH5A1P51649 535 aaPredicted RBP26.36■■□□□ 1.81
CCDC28B-203ENST00000461819 AKAP17AQ02040 695 aaKnown RBP26.36■■□□□ 1.81
CCDC28B-203ENST00000461819 IFFO2Q5TF58 517 aa26.36■■□□□ 1.81
CCDC28B-203ENST00000461819 U2AF1L4Q8WU68 220 aaKnown RBP26.36■■□□□ 1.81
CCDC28B-203ENST00000461819 GPKOWQ92917 476 aaPredicted RBP eCLIP26.36■■□□□ 1.81
CCDC28B-203ENST00000461819 SLKQ9H2G2 1235 aaPredicted RBP26.36■■□□□ 1.81
CCDC28B-203ENST00000461819 ZHX1Q9UKY1 873 aaPredicted RBP26.36■■□□□ 1.81
CCDC28B-203ENST00000461819 TPCN1Q9ULQ1 816 aa26.36■■□□□ 1.81
CCDC28B-203ENST00000461819 SNAI1O95863 264 aaPredicted RBP26.35■■□□□ 1.81
CCDC28B-203ENST00000461819 GJA8P48165 433 aa26.35■■□□□ 1.81
CCDC28B-203ENST00000461819 HSD17B4P51659 736 aa26.35■■□□□ 1.81
CCDC28B-203ENST00000461819 SAMD3Q8N6K7 520 aa26.35■■□□□ 1.81
CCDC28B-203ENST00000461819 DNERQ8NFT8 737 aa26.35■■□□□ 1.81
CCDC28B-203ENST00000461819 SYTL5Q8TDW5 730 aaPredicted RBP26.35■■□□□ 1.81
CCDC28B-203ENST00000461819 BACH2Q9BYV9 841 aa26.35■■□□□ 1.81
CCDC28B-203ENST00000461819 RBM27Q9P2N5 1060 aaKnown RBP26.35■■□□□ 1.81
CCDC28B-203ENST00000461819 GCOM1H8Y6P7 765 aaPredicted RBP26.34■■□□□ 1.81
CCDC28B-203ENST00000461819 SGPL1O95470 568 aa26.34■■□□□ 1.81
CCDC28B-203ENST00000461819 POLR2MP0CAP2 368 aa26.34■■□□□ 1.81
CCDC28B-203ENST00000461819 EN2P19622 333 aaPredicted RBP26.34■■□□□ 1.81
CCDC28B-203ENST00000461819 HOXA13P31271 388 aaPredicted RBP26.34■■□□□ 1.81
CCDC28B-203ENST00000461819 GHRHRQ02643 423 aa26.34■■□□□ 1.81
CCDC28B-203ENST00000461819 CPLX2Q6PUV4 134 aaKnown RBP26.34■■□□□ 1.81
CCDC28B-203ENST00000461819 PHKBQ93100 1093 aa26.34■■□□□ 1.81
CCDC28B-203ENST00000461819 KIF2CQ99661 725 aa26.34■■□□□ 1.81
CCDC28B-203ENST00000461819 ABHD16BQ9H3Z7 469 aa26.34■■□□□ 1.81
CCDC28B-203ENST00000461819 MAP3K20Q9NYL2 800 aaKnown RBP26.34■■□□□ 1.81
CCDC28B-203ENST00000461819 DDX20Q9UHI6 824 aaKnown RBP26.34■■□□□ 1.81
CCDC28B-203ENST00000461819 LOC102724159A0A0B4J2E5 919 aa26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 B4DLN1 442 aa26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 SEPT4O43236 478 aa26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 MSCO60682 206 aa26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 TFRCP02786 760 aaKnown RBP26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 IFNAR1P17181 557 aa26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 MRPL12P52815 198 aaKnown RBP26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 PWP2Q15269 919 aaKnown RBP26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 WWC2Q6AWC2 1192 aa26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 CUL5Q93034 780 aa26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 SLC26A6Q9BXS9 759 aa26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 COL20A1Q9P218 1284 aa26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 DDX49Q9Y6V7 483 aaKnown RBP26.33■■□□□ 1.81
CCDC28B-203ENST00000461819 hCG_1984214I3L0E3 225 aa26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 PPFIA3O75145 1194 aa26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 NAPAP54920 295 aa26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 PDE4DQ08499 809 aa26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 ACVR2BQ13705 512 aa26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 NTRK3Q16288 839 aa26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 TRIM22Q8IYM9 498 aa26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 ZNF713Q8N859 430 aaPredicted RBP26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 NSUN6Q8TEA1 469 aaKnown RBP26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 TBC1D32Q96NH3 1257 aa26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 TAAR1Q96RJ0 339 aa26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 RMDN3Q96TC7 470 aa26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 RNF26Q9BY78 433 aaPredicted RBP26.32■■□□□ 1.8
CCDC28B-203ENST00000461819 PRPF3O43395 683 aaKnown RBP26.31■■□□□ 1.8
CCDC28B-203ENST00000461819 PFKFB2O60825 505 aa26.31■■□□□ 1.8
CCDC28B-203ENST00000461819 ZNF865P0CJ78 1059 aaPredicted RBP26.31■■□□□ 1.8
CCDC28B-203ENST00000461819 SCG2P13521 617 aa26.31■■□□□ 1.8
CCDC28B-203ENST00000461819 SCRN1Q12765 414 aa26.31■■□□□ 1.8
CCDC28B-203ENST00000461819 RABEP1Q15276 862 aa26.31■■□□□ 1.8
CCDC28B-203ENST00000461819 PFKFB3Q16875 520 aaPredicted RBP26.31■■□□□ 1.8
CCDC28B-203ENST00000461819 ARHGEF16Q5VV41 709 aa26.31■■□□□ 1.8
CCDC28B-203ENST00000461819 FCHSD1Q86WN1 690 aa26.31■■□□□ 1.8
CCDC28B-203ENST00000461819 SMARCC2Q8TAQ2 1214 aa26.31■■□□□ 1.8
CCDC28B-203ENST00000461819 SHISA4Q96DD7 197 aa26.31■■□□□ 1.8
CCDC28B-203ENST00000461819 AKR1A1P14550 325 aa26.3■■□□□ 1.8
CCDC28B-203ENST00000461819 SSRP1Q08945 709 aaKnown RBP26.3■■□□□ 1.8
CCDC28B-203ENST00000461819 ANO1Q5XXA6 986 aa26.3■■□□□ 1.8
CCDC28B-203ENST00000461819 PPP1R18Q6NYC8 613 aa26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms