RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-215ENST00000460912 ZCWPW2Q504Y3 356 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 PDILTQ8N807 584 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 KIAA0895Q8NCT3 520 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 TBC1D22AQ8WUA7 517 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 AK8Q96MA6 479 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 TRERF1Q96PN7 1200 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 IDI2Q9BXS1 227 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 FUT8Q9BYC5 575 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 SERPINA10Q9UK55 444 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 ZNFX1Q9P2E3 1918 aaKnown RBP9.89□□□□□ -0.83
SYNE1-215ENST00000460912 SMCHD1A6NHR9 2005 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 SPDYE4A6NLX3 237 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 CDK8P49336 464 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 BLZF1Q9H2G9 400 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 CTNND2Q9UQB3 1225 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 DAGLAQ9Y4D2 1042 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 SIP14410 1827 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 ABCB11O95342 1321 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 A0A1W2PQJ5 194 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 DALRD3Q5D0E6 543 aaKnown RBP9.88□□□□□ -0.83
SYNE1-215ENST00000460912 CC2D1AQ6P1N0 951 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-215ENST00000460912 MXD3Q9BW11 206 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 FHDC1Q9C0D6 1143 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-215ENST00000460912 SPON1Q9HCB6 807 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 ANKIB1Q9P2G1 1089 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.88□□□□□ -0.83
SYNE1-215ENST00000460912 V9GYY5 206 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-215ENST00000460912 H7C1D1 291 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 KIF5BP33176 963 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 GRB10Q13322 594 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 ASTE1Q2TB18 679 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-215ENST00000460912 CENPPQ6IPU0 288 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 SH3BP5LQ7L8J4 393 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 MB21D1Q8N884 522 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 CTCFLQ8NI51 663 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-215ENST00000460912 ZBTB9Q96C00 473 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 EYA3Q99504 573 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 TRIM9Q9C026 710 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 SIK3Q9Y2K2 1263 aa9.88□□□□□ -0.83
SYNE1-215ENST00000460912 PSMD14O00487 310 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 SOCS7O14512 581 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 PDHBP11177 359 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 EEF1GP26641 437 aaKnown RBP9.87□□□□□ -0.83
SYNE1-215ENST00000460912 POLD1P28340 1107 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 CDC25AP30304 524 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 AFMP43652 599 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 PAK1Q13153 545 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 KARSQ15046 597 aaKnown RBP9.87□□□□□ -0.83
SYNE1-215ENST00000460912 OLIG1Q8TAK6 271 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 RASGRP4Q8TDF6 673 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 RABGGTAQ92696 567 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 SYT17Q9BSW7 474 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 DESI2Q9BSY9 194 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 MCM9Q9NXL9 1143 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 MYO1AQ9UBC5 1043 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 KCNJ18B7U540 433 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 hCG_1984214I3L0E3 225 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 LDHBP07195 334 aaKnown RBP9.87□□□□□ -0.83
SYNE1-215ENST00000460912 GNL2Q13823 731 aaKnown RBP9.87□□□□□ -0.83
SYNE1-215ENST00000460912 TRIM14Q14142 442 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 KCNJ12Q14500 433 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 ECM1Q16610 540 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 TRAPPC11Q7Z392 1133 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 GPR161Q8N6U8 529 aaKnown RBP9.87□□□□□ -0.83
SYNE1-215ENST00000460912 ZNF713Q8N859 430 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-215ENST00000460912 NELFBQ8WX92 580 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 ERGIC2Q96RQ1 377 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 SEMA6BQ9H3T3 888 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 ARID2Q68CP9 1835 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 FRMD3A2A2Y4 597 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 ZNF263O14978 683 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 MCM7P33993 719 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 RSBN1LQ6PCB5 846 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-215ENST00000460912 DDX4Q9NQI0 724 aaKnown RBP9.87□□□□□ -0.83
SYNE1-215ENST00000460912 ST7Q9NRC1 585 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 PCDHAC2Q9Y5I4 1007 aa9.87□□□□□ -0.83
SYNE1-215ENST00000460912 TRIM49BA6NDI0 452 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 PARP1P09874 1014 aaKnown RBP9.86□□□□□ -0.83
SYNE1-215ENST00000460912 ZBTB48P10074 688 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-215ENST00000460912 GSTO1P78417 241 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 HSP90AA4PQ58FG1 418 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 PAPD7Q5XG87 772 aaKnown RBP9.86□□□□□ -0.83
SYNE1-215ENST00000460912 LRRC55Q6ZSA7 311 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 DNAJC18Q9H819 358 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 FAM198AQ9UFP1 575 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 ZNF541Q9H0D2 1346 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 RCCD1A6NED2 376 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 GNAQP50148 359 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 SIAH1Q8IUQ4 282 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 CNGA4Q8IV77 575 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 AGBL3Q8NEM8 1001 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 HAS1Q92839 578 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 CEP95Q96GE4 821 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 DHTKD1Q96HY7 919 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-215ENST00000460912 CARD6Q9BX69 1037 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 NENFQ9UMX5 172 aa9.86□□□□□ -0.83
SYNE1-215ENST00000460912 MARSP56192 900 aaKnown RBP9.86□□□□□ -0.83
SYNE1-215ENST00000460912 MCCD1P59942 119 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-215ENST00000460912 BEND6Q5SZJ8 279 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-215ENST00000460912 P2RX7Q99572 595 aaKnown RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms