RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 MSRAQ9UJ68 235 aa25.33■■□□□ 1.65
CPNE1-220ENST00000458038 CHD9Q3L8U1 2897 aa25.33■■□□□ 1.64
CPNE1-220ENST00000458038 GRIN2DO15399 1336 aa25.33■■□□□ 1.64
CPNE1-220ENST00000458038 PTPDC1A2A3K4 754 aa25.32■■□□□ 1.64
CPNE1-220ENST00000458038 B4DLN1 442 aa25.32■■□□□ 1.64
CPNE1-220ENST00000458038 SUPT20HL2P0C7V6 817 aa25.32■■□□□ 1.64
CPNE1-220ENST00000458038 ACRP10323 421 aa25.32■■□□□ 1.64
CPNE1-220ENST00000458038 PDHBP11177 359 aa25.32■■□□□ 1.64
CPNE1-220ENST00000458038 CPT1AP50416 773 aa25.32■■□□□ 1.64
CPNE1-220ENST00000458038 MRPL12P52815 198 aaKnown RBP25.32■■□□□ 1.64
CPNE1-220ENST00000458038 AKNAD1Q5T1N1 836 aa25.32■■□□□ 1.64
CPNE1-220ENST00000458038 RPUSD2Q8IZ73 545 aaKnown RBP25.32■■□□□ 1.64
CPNE1-220ENST00000458038 CRBNQ96SW2 442 aa25.32■■□□□ 1.64
CPNE1-220ENST00000458038 GAS2L1Q99501 681 aaPredicted RBP25.32■■□□□ 1.64
CPNE1-220ENST00000458038 PBX4Q9BYU1 374 aa25.32■■□□□ 1.64
CPNE1-220ENST00000458038 WDR11Q9BZH6 1224 aa25.32■■□□□ 1.64
CPNE1-220ENST00000458038 MAF1Q9H063 256 aa25.32■■□□□ 1.64
CPNE1-220ENST00000458038 GPCPD1Q9NPB8 672 aa25.32■■□□□ 1.64
CPNE1-220ENST00000458038 RBM47A0AV96 593 aaKnown RBP25.31■■□□□ 1.64
CPNE1-220ENST00000458038 NFIBO00712 420 aa25.31■■□□□ 1.64
CPNE1-220ENST00000458038 NKRFO15226 690 aaKnown RBP eCLIP25.31■■□□□ 1.64
CPNE1-220ENST00000458038 ZNF543Q08ER8 600 aa25.31■■□□□ 1.64
CPNE1-220ENST00000458038 BRDTQ58F21 947 aaPredicted RBP25.31■■□□□ 1.64
CPNE1-220ENST00000458038 DNERQ8NFT8 737 aa25.31■■□□□ 1.64
CPNE1-220ENST00000458038 NOC4LQ9BVI4 516 aaKnown RBP25.31■■□□□ 1.64
CPNE1-220ENST00000458038 CCDC171Q6TFL3 1326 aa25.31■■□□□ 1.64
CPNE1-220ENST00000458038 WDR19Q8NEZ3 1342 aa25.31■■□□□ 1.64
CPNE1-220ENST00000458038 CCDC178Q5BJE1 867 aa25.3■■□□□ 1.64
CPNE1-220ENST00000458038 GPATCH4Q5T3I0 446 aaKnown RBP25.3■■□□□ 1.64
CPNE1-220ENST00000458038 RNF207Q6ZRF8 634 aa25.3■■□□□ 1.64
CPNE1-220ENST00000458038 PURBQ96QR8 312 aaKnown RBP25.3■■□□□ 1.64
CPNE1-220ENST00000458038 TRPV6Q9H1D0 765 aa25.3■■□□□ 1.64
CPNE1-220ENST00000458038 DDX49Q9Y6V7 483 aaKnown RBP25.3■■□□□ 1.64
CPNE1-220ENST00000458038 FRMPD2Q68DX3 1309 aaPredicted RBP25.3■■□□□ 1.64
CPNE1-220ENST00000458038 TRIM6-TRIM34B2RNG4 842 aa25.29■■□□□ 1.64
CPNE1-220ENST00000458038 B4GALT4O60513 344 aa25.29■■□□□ 1.64
CPNE1-220ENST00000458038 SNHG28P0DPA3 235 aa25.29■■□□□ 1.64
CPNE1-220ENST00000458038 NMIQ13287 307 aaPredicted RBP25.29■■□□□ 1.64
CPNE1-220ENST00000458038 CLEC4DQ8WXI8 215 aa25.29■■□□□ 1.64
CPNE1-220ENST00000458038 ESR2Q92731 530 aa25.29■■□□□ 1.64
CPNE1-220ENST00000458038 ALDH8A1Q9H2A2 487 aaPredicted RBP25.29■■□□□ 1.64
CPNE1-220ENST00000458038 GPHNQ9NQX3 736 aaPredicted RBP25.29■■□□□ 1.64
CPNE1-220ENST00000458038 RAD50Q92878 1312 aa25.29■■□□□ 1.64
CPNE1-220ENST00000458038 GRXCR1A8MXD5 290 aa25.28■■□□□ 1.64
CPNE1-220ENST00000458038 KPNA6O60684 536 aa25.28■■□□□ 1.64
CPNE1-220ENST00000458038 PDE4DQ08499 809 aa25.28■■□□□ 1.64
CPNE1-220ENST00000458038 ZNF589Q86UQ0 364 aaPredicted RBP25.28■■□□□ 1.64
CPNE1-220ENST00000458038 RGS22Q8NE09 1264 aa25.28■■□□□ 1.64
CPNE1-220ENST00000458038 PFKMP08237 780 aa25.27■■□□□ 1.64
CPNE1-220ENST00000458038 CALML3P27482 149 aa25.27■■□□□ 1.64
CPNE1-220ENST00000458038 PBX2P40425 430 aa25.27■■□□□ 1.64
CPNE1-220ENST00000458038 HAND2P61296 217 aa25.27■■□□□ 1.64
CPNE1-220ENST00000458038 PSMC6P62333 389 aa25.27■■□□□ 1.64
CPNE1-220ENST00000458038 PURAQ00577 322 aaKnown RBP25.27■■□□□ 1.64
CPNE1-220ENST00000458038 DGKHQ86XP1 1220 aa25.27■■□□□ 1.64
CPNE1-220ENST00000458038 SCFD2Q8WU76 684 aa25.27■■□□□ 1.64
CPNE1-220ENST00000458038 RILPL2Q969X0 211 aa25.27■■□□□ 1.64
CPNE1-220ENST00000458038 EDNRBP24530 442 aa25.26■■□□□ 1.63
CPNE1-220ENST00000458038 CCL23P55773 120 aa25.26■■□□□ 1.63
CPNE1-220ENST00000458038 RPS6P62753 249 aaKnown RBP25.26■■□□□ 1.63
CPNE1-220ENST00000458038 TMEM63BQ5T3F8 832 aa25.26■■□□□ 1.63
CPNE1-220ENST00000458038 MTG1Q9BT17 334 aaPredicted RBP25.26■■□□□ 1.63
CPNE1-220ENST00000458038 RWDD1Q9H446 243 aaPredicted RBP25.26■■□□□ 1.63
CPNE1-220ENST00000458038 SLC28A3Q9HAS3 691 aa25.26■■□□□ 1.63
CPNE1-220ENST00000458038 CXXC1Q9P0U4 656 aaPredicted RBP25.26■■□□□ 1.63
CPNE1-220ENST00000458038 UMODL1Q5DID0 1318 aa25.26■■□□□ 1.63
CPNE1-220ENST00000458038 NCOR1O75376 2440 aa25.26■■□□□ 1.63
CPNE1-220ENST00000458038 SCN10AQ9Y5Y9 1956 aa25.25■■□□□ 1.63
CPNE1-220ENST00000458038 ZNF213O14771 459 aa25.25■■□□□ 1.63
CPNE1-220ENST00000458038 PTGS1P23219 599 aa25.25■■□□□ 1.63
CPNE1-220ENST00000458038 PPP2R5BQ15173 497 aa25.25■■□□□ 1.63
CPNE1-220ENST00000458038 SLC30A10Q6XR72 485 aa25.25■■□□□ 1.63
CPNE1-220ENST00000458038 OTOP2Q7RTS6 562 aa25.25■■□□□ 1.63
CPNE1-220ENST00000458038 IQCA1Q86XH1 822 aa25.25■■□□□ 1.63
CPNE1-220ENST00000458038 OR6J1Q8NGC5 347 aa25.25■■□□□ 1.63
CPNE1-220ENST00000458038 LNPKQ9C0E8 428 aa25.25■■□□□ 1.63
CPNE1-220ENST00000458038 WNT8AQ9H1J5 351 aa25.25■■□□□ 1.63
CPNE1-220ENST00000458038 SLC4A7Q9Y6M7 1214 aa25.25■■□□□ 1.63
CPNE1-220ENST00000458038 CHD7Q9P2D1 2997 aa25.25■■□□□ 1.63
CPNE1-220ENST00000458038 TNKSO95271 1327 aa25.24■■□□□ 1.63
CPNE1-220ENST00000458038 MYL3P08590 195 aa25.24■■□□□ 1.63
CPNE1-220ENST00000458038 SDSP20132 328 aa25.24■■□□□ 1.63
CPNE1-220ENST00000458038 TJAP1Q5JTD0 557 aa25.24■■□□□ 1.63
CPNE1-220ENST00000458038 NFRKBQ6P4R8 1299 aa25.24■■□□□ 1.63
CPNE1-220ENST00000458038 SMC5Q8IY18 1101 aa25.24■■□□□ 1.63
CPNE1-220ENST00000458038 PRDM12Q9H4Q4 367 aa25.24■■□□□ 1.63
CPNE1-220ENST00000458038 SPTBN5Q9NRC6 3674 aaKnown RBP25.23■■□□□ 1.63
CPNE1-220ENST00000458038 A6NJR5 290 aa25.23■■□□□ 1.63
CPNE1-220ENST00000458038 PTPN11Q06124 597 aaPredicted RBP25.23■■□□□ 1.63
CPNE1-220ENST00000458038 TBC1D10CQ8IV04 446 aa25.23■■□□□ 1.63
CPNE1-220ENST00000458038 OSBPL3Q9H4L5 887 aa25.23■■□□□ 1.63
CPNE1-220ENST00000458038 GBF1Q92538 1859 aa25.23■■□□□ 1.63
CPNE1-220ENST00000458038 HIP1O00291 1037 aa25.22■■□□□ 1.63
CPNE1-220ENST00000458038 PCDHA11Q9Y5I1 949 aa25.22■■□□□ 1.63
CPNE1-220ENST00000458038 RFC2P35250 354 aa25.21■■□□□ 1.63
CPNE1-220ENST00000458038 TTLL4Q14679 1199 aa25.21■■□□□ 1.63
CPNE1-220ENST00000458038 NBPF20Q3BBV1 942 aa25.21■■□□□ 1.63
CPNE1-220ENST00000458038 USP38Q8NB14 1042 aa25.21■■□□□ 1.63
CPNE1-220ENST00000458038 ANKS1AQ92625 1134 aa25.21■■□□□ 1.63
CPNE1-220ENST00000458038 TRMT13Q9NUP7 481 aaKnown RBP25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms