RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 MKL1Q969V6 931 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 KIFC2Q96AC6 838 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 TRIM47Q96LD4 638 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 MRPL44Q9H9J2 332 aaKnown RBP16.9■□□□□ 0.3
LDLR-202ENST00000455727 LRWD1Q9UFC0 647 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 SIPA1L1O43166 1804 aa16.89■□□□□ 0.29
LDLR-202ENST00000455727 ZBTB5O15062 677 aa16.89■□□□□ 0.29
LDLR-202ENST00000455727 ERCC6LQ2NKX8 1250 aa16.89■□□□□ 0.29
LDLR-202ENST00000455727 STRIP1Q5VSL9 837 aa16.89■□□□□ 0.29
LDLR-202ENST00000455727 CNNM4Q6P4Q7 775 aa16.89■□□□□ 0.29
LDLR-202ENST00000455727 CYP26C1Q6V0L0 522 aa16.89■□□□□ 0.29
LDLR-202ENST00000455727 CLEC10AQ8IUN9 316 aa16.89■□□□□ 0.29
LDLR-202ENST00000455727 CUL5Q93034 780 aa16.89■□□□□ 0.29
LDLR-202ENST00000455727 P2RX5Q93086 422 aa16.89■□□□□ 0.29
LDLR-202ENST00000455727 MAGEC2Q9UBF1 373 aaPredicted RBP16.89■□□□□ 0.29
LDLR-202ENST00000455727 EFCAB8A8MWE9 144 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 PPP1R11O60927 126 aaPredicted RBP16.88■□□□□ 0.29
LDLR-202ENST00000455727 ASIC1P78348 528 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 NFIAQ12857 509 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 GRB10Q13322 594 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 SV2BQ7L1I2 683 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 NUP88Q99567 741 aaPredicted RBP16.88■□□□□ 0.29
LDLR-202ENST00000455727 ARID3AQ99856 593 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 DUSP9Q99956 384 aaKnown RBP16.88■□□□□ 0.29
LDLR-202ENST00000455727 IDI2Q9BXS1 227 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 GLT8D2Q9H1C3 349 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 OGFRQ9NZT2 677 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 MYH7BA7E2Y1 1941 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 ZNF646O15015 1829 aaPredicted RBP16.88■□□□□ 0.29
LDLR-202ENST00000455727 PVALEFA0A1B0GWK0 134 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 SLC37A4O43826 429 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 DNM2P50570 870 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 FAM114A1Q8IWE2 563 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 MNS1Q8NEH6 495 aa16.88■□□□□ 0.29
LDLR-202ENST00000455727 DDX41Q9UJV9 622 aaKnown RBP16.88■□□□□ 0.29
LDLR-202ENST00000455727 TDP2O95551 362 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 H2AFXP16104 143 aaPredicted RBP16.87■□□□□ 0.29
LDLR-202ENST00000455727 GCFC2P16383 781 aaKnown RBP16.87■□□□□ 0.29
LDLR-202ENST00000455727 KRT9P35527 623 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 STK4Q13043 487 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 TTBK2Q6IQ55 1244 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 FBXO38Q6PIJ6 1188 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 CSGALNACT2Q8N6G5 542 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 LRRN4CLQ8ND94 238 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 NAP1L4Q99733 375 aaKnown RBP16.87■□□□□ 0.29
LDLR-202ENST00000455727 LRRC27Q9C0I9 530 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 BLOC1S4Q9NUP1 217 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 RNF225M0QZC1 329 aaPredicted RBP16.87■□□□□ 0.29
LDLR-202ENST00000455727 MPHOSPH10O00566 681 aaKnown RBP16.87■□□□□ 0.29
LDLR-202ENST00000455727 TADA3O75528 432 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 STYK1Q6J9G0 422 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 CREBRFQ8IUR6 639 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 UBXN4Q92575 508 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 PNMA5Q96PV4 448 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 NYAP2Q9P242 653 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 PI4KBQ9UBF8 816 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 MRFAP1Q9Y605 127 aa16.87■□□□□ 0.29
LDLR-202ENST00000455727 ERVK-24P63145 666 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 CCDC96Q2M329 555 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 DACT2Q5SW24 774 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 DCAF4Q8WV16 495 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 LARP4BQ92615 738 aaKnown RBP16.86■□□□□ 0.29
LDLR-202ENST00000455727 DNAJC18Q9H819 358 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 KANSL2Q9H9L4 492 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 DBNDD1Q9H9R9 158 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 CAPN11Q9UMQ6 739 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 SCN9AQ15858 1988 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 USP17L10C9JJH3 530 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 KIF5CO60282 957 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 APBA3O96018 575 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 TNNI2P48788 182 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 KRT79Q5XKE5 535 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 ANKRD40Q6AI12 368 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 UNC13DQ70J99 1090 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 ZFPM1Q8IX07 1006 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 OR8K1Q8NGG5 319 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 ZNF622Q969S3 477 aaKnown RBP eCLIP16.86■□□□□ 0.293e-9■□□□□ 10.8
LDLR-202ENST00000455727 CDK5RAP3Q96JB5 506 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 TUBGCP2Q9BSJ2 902 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 CARD6Q9BX69 1037 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 PSTPIP2Q9H939 334 aa16.86■□□□□ 0.29
LDLR-202ENST00000455727 ATF5Q9Y2D1 282 aaPredicted RBP16.86■□□□□ 0.29
LDLR-202ENST00000455727 TUBB2AQ13885 445 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 CENPPQ6IPU0 288 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 KCTD1Q719H9 257 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 RETREG2Q8NC44 543 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 DNAJC7Q99615 494 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 TUBB2BQ9BVA1 445 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 NUP58Q9BVL2 599 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 LZTFL1Q9NQ48 299 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 KCNQ5Q9NR82 932 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 LUC7L2Q9Y383 392 aaKnown RBP16.85■□□□□ 0.29
LDLR-202ENST00000455727 TTC26A0AVF1 554 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 SLC16A2P36021 539 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 ATP2B2Q01814 1243 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 TMEM119Q4V9L6 283 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 TATDN1Q6P1N9 297 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 C2CD5Q86YS7 1000 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 KIAA0895Q8NCT3 520 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 RAD54LQ92698 747 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms