RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 EPHB4P54760 987 aa24.27■■□□□ 1.48
SDC1-205ENST00000447124 CDC37Q16543 378 aaPredicted RBP24.27■■□□□ 1.48
SDC1-205ENST00000447124 ASPRV1Q53RT3 343 aa24.27■■□□□ 1.48
SDC1-205ENST00000447124 Q7L0L9 218 aa24.27■■□□□ 1.48
SDC1-205ENST00000447124 TLK2Q86UE8 772 aa24.27■■□□□ 1.48
SDC1-205ENST00000447124 STAG2Q8N3U4 1231 aa24.27■■□□□ 1.48
SDC1-205ENST00000447124 UBAC1Q9BSL1 405 aa24.27■■□□□ 1.48
SDC1-205ENST00000447124 JMJD4Q9H9V9 463 aa24.27■■□□□ 1.48
SDC1-205ENST00000447124 VAT1LQ9HCJ6 419 aa24.27■■□□□ 1.48
SDC1-205ENST00000447124 RBM47A0AV96 593 aaKnown RBP24.26■■□□□ 1.47
SDC1-205ENST00000447124 ARVCFO00192 962 aa24.26■■□□□ 1.47
SDC1-205ENST00000447124 PARP1P09874 1014 aaKnown RBP24.26■■□□□ 1.47
SDC1-205ENST00000447124 IFIT1BQ5T764 474 aaKnown RBP24.26■■□□□ 1.47
SDC1-205ENST00000447124 RGS22Q8NE09 1264 aa24.26■■□□□ 1.47
SDC1-205ENST00000447124 Q9Y3F1 56 aa24.26■■□□□ 1.47
SDC1-205ENST00000447124 LOC102724159A0A0B4J2E5 919 aa24.25■■□□□ 1.47
SDC1-205ENST00000447124 DCDC2CA8MYV0 355 aa24.25■■□□□ 1.47
SDC1-205ENST00000447124 PWP2Q15269 919 aaKnown RBP24.25■■□□□ 1.47
SDC1-205ENST00000447124 FSCN1Q16658 493 aaKnown RBP24.25■■□□□ 1.47
SDC1-205ENST00000447124 QRICH1Q2TAL8 776 aa24.25■■□□□ 1.47
SDC1-205ENST00000447124 CXCL17Q6UXB2 119 aa24.25■■□□□ 1.47
SDC1-205ENST00000447124 STOX1Q6ZVD7 989 aa24.25■■□□□ 1.47
SDC1-205ENST00000447124 AP5M1Q9H0R1 490 aa24.25■■□□□ 1.47
SDC1-205ENST00000447124 SENP2Q9HC62 589 aa24.25■■□□□ 1.47
SDC1-205ENST00000447124 U3KPZ7 1027 aaPredicted RBP24.25■■□□□ 1.47
SDC1-205ENST00000447124 A0A0U1RQG5 324 aaPredicted RBP24.24■■□□□ 1.47
SDC1-205ENST00000447124 RAG1P15918 1043 aa24.24■■□□□ 1.47
SDC1-205ENST00000447124 EDNRBP24530 442 aa24.24■■□□□ 1.47
SDC1-205ENST00000447124 DUSP28Q4G0W2 176 aa24.24■■□□□ 1.47
SDC1-205ENST00000447124 DEFB123Q8N688 67 aa24.24■■□□□ 1.47
SDC1-205ENST00000447124 SLC43A3Q8NBI5 491 aa24.24■■□□□ 1.47
SDC1-205ENST00000447124 MAP4K1Q92918 833 aa24.24■■□□□ 1.47
SDC1-205ENST00000447124 WDR11Q9BZH6 1224 aa24.24■■□□□ 1.47
SDC1-205ENST00000447124 TBX21Q9UL17 535 aa24.24■■□□□ 1.47
SDC1-205ENST00000447124 GRIN2DO15399 1336 aa24.24■■□□□ 1.47
SDC1-205ENST00000447124 LAMA2P24043 3122 aaKnown RBP24.23■■□□□ 1.47
SDC1-205ENST00000447124 E7EWF7 191 aa24.23■■□□□ 1.47
SDC1-205ENST00000447124 SLC35G1Q2M3R5 365 aa24.23■■□□□ 1.47
SDC1-205ENST00000447124 MAD2L2Q9UI95 211 aa24.23■■□□□ 1.47
SDC1-205ENST00000447124 ABCB11O95342 1321 aa24.22■■□□□ 1.47
SDC1-205ENST00000447124 PALM3A6NDB9 673 aaPredicted RBP24.22■■□□□ 1.47
SDC1-205ENST00000447124 TRDNQ13061 729 aa24.22■■□□□ 1.47
SDC1-205ENST00000447124 CHST3Q7LGC8 479 aa24.22■■□□□ 1.47
SDC1-205ENST00000447124 SKAP1Q86WV1 359 aa24.22■■□□□ 1.47
SDC1-205ENST00000447124 FAM126BQ8IXS8 530 aa24.22■■□□□ 1.47
SDC1-205ENST00000447124 DNERQ8NFT8 737 aa24.22■■□□□ 1.47
SDC1-205ENST00000447124 SYTL5Q8TDW5 730 aaPredicted RBP24.22■■□□□ 1.47
SDC1-205ENST00000447124 TAAR1Q96RJ0 339 aa24.22■■□□□ 1.47
SDC1-205ENST00000447124 COL20A1Q9P218 1284 aa24.22■■□□□ 1.47
SDC1-205ENST00000447124 LRRC37A2A6NM11 1700 aa24.21■■□□□ 1.47
SDC1-205ENST00000447124 KLRF2D3W0D1 207 aa24.21■■□□□ 1.47
SDC1-205ENST00000447124 TIMP1P01033 207 aa24.21■■□□□ 1.47
SDC1-205ENST00000447124 FBXO11Q86XK2 927 aa24.21■■□□□ 1.47
SDC1-205ENST00000447124 MTMR8Q96EF0 704 aa24.21■■□□□ 1.47
SDC1-205ENST00000447124 MTMR10Q9NXD2 777 aa24.21■■□□□ 1.47
SDC1-205ENST00000447124 IFIT3O14879 490 aaKnown RBP24.2■■□□□ 1.46
SDC1-205ENST00000447124 DHX16O60231 1041 aaKnown RBP24.2■■□□□ 1.46
SDC1-205ENST00000447124 CABYRO75952 493 aa24.2■■□□□ 1.46
SDC1-205ENST00000447124 CD4P01730 458 aa24.2■■□□□ 1.46
SDC1-205ENST00000447124 PDE4DQ08499 809 aa24.2■■□□□ 1.46
SDC1-205ENST00000447124 ITGA7Q13683 1181 aa24.2■■□□□ 1.46
SDC1-205ENST00000447124 COPS5Q92905 334 aa24.2■■□□□ 1.46
SDC1-205ENST00000447124 RBM8AQ9Y5S9 174 aaKnown RBP24.2■■□□□ 1.46
SDC1-205ENST00000447124 MROH7Q68CQ1 1323 aa24.19■■□□□ 1.46
SDC1-205ENST00000447124 ZEB2O60315 1214 aa24.19■■□□□ 1.46
SDC1-205ENST00000447124 PPP1R11O60927 126 aaPredicted RBP24.19■■□□□ 1.46
SDC1-205ENST00000447124 ANTXR2P58335 489 aa24.19■■□□□ 1.46
SDC1-205ENST00000447124 PSMC6P62333 389 aa24.19■■□□□ 1.46
SDC1-205ENST00000447124 NCOA7Q8NI08 942 aa24.19■■□□□ 1.46
SDC1-205ENST00000447124 MAF1Q9H063 256 aa24.19■■□□□ 1.46
SDC1-205ENST00000447124 MRPL11Q9Y3B7 192 aaKnown RBP24.19■■□□□ 1.46
SDC1-205ENST00000447124 OPLAHO14841 1288 aa24.18■■□□□ 1.46
SDC1-205ENST00000447124 FPGSQ05932 587 aa24.18■■□□□ 1.46
SDC1-205ENST00000447124 GRM4Q14833 912 aa24.18■■□□□ 1.46
SDC1-205ENST00000447124 C16orf59Q7L2K0 433 aa24.18■■□□□ 1.46
SDC1-205ENST00000447124 MB21D2Q8IYB1 491 aaPredicted RBP24.18■■□□□ 1.46
SDC1-205ENST00000447124 IGDCC4Q8TDY8 1250 aa24.18■■□□□ 1.46
SDC1-205ENST00000447124 LSG1Q9H089 658 aaKnown RBP24.18■■□□□ 1.46
SDC1-205ENST00000447124 ARIH2O95376 493 aa24.17■■□□□ 1.46
SDC1-205ENST00000447124 TROAPQ12815 778 aa24.17■■□□□ 1.46
SDC1-205ENST00000447124 MFSD5Q6N075 450 aa24.17■■□□□ 1.46
SDC1-205ENST00000447124 MCF2L2Q86YR7 1114 aa24.17■■□□□ 1.46
SDC1-205ENST00000447124 BAZ2BQ9UIF8 2168 aaKnown RBP24.17■■□□□ 1.46
SDC1-205ENST00000447124 COL9A3Q14050 684 aaPredicted RBP24.16■■□□□ 1.46
SDC1-205ENST00000447124 WTAPQ15007 396 aa24.16■■□□□ 1.46
SDC1-205ENST00000447124 FAM109BQ6ICB4 259 aaPredicted RBP24.16■■□□□ 1.46
SDC1-205ENST00000447124 RALYLQ86SE5 291 aaKnown RBP24.16■■□□□ 1.46
SDC1-205ENST00000447124 OR6J1Q8NGC5 347 aa24.16■■□□□ 1.46
SDC1-205ENST00000447124 SCFD2Q8WU76 684 aa24.16■■□□□ 1.46
SDC1-205ENST00000447124 AMNQ9BXJ7 453 aa24.16■■□□□ 1.46
SDC1-205ENST00000447124 TRPV6Q9H1D0 765 aa24.16■■□□□ 1.46
SDC1-205ENST00000447124 RIOX1Q9H6W3 641 aa24.16■■□□□ 1.46
SDC1-205ENST00000447124 GPHNQ9NQX3 736 aaPredicted RBP24.16■■□□□ 1.46
SDC1-205ENST00000447124 ZBTB5O15062 677 aa24.15■■□□□ 1.46
SDC1-205ENST00000447124 TLR3O15455 904 aaKnown RBP24.15■■□□□ 1.46
SDC1-205ENST00000447124 CYTH3O43739 400 aa24.15■■□□□ 1.46
SDC1-205ENST00000447124 TXNP10599 105 aaKnown RBP24.15■■□□□ 1.46
SDC1-205ENST00000447124 CCDC62Q6P9F0 684 aa24.15■■□□□ 1.46
SDC1-205ENST00000447124 NSUN6Q8TEA1 469 aaKnown RBP24.15■■□□□ 1.46
SDC1-205ENST00000447124 RMDN3Q96TC7 470 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms