RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 FBXO11Q86XK2 927 aa19.87■□□□□ 0.77
LIME1-202ENST00000444951 CCAR1Q8IX12 1150 aaKnown RBP19.87■□□□□ 0.77
LIME1-202ENST00000444951 C7orf61Q8IZ16 206 aa19.87■□□□□ 0.77
LIME1-202ENST00000444951 GPKOWQ92917 476 aaPredicted RBP eCLIP19.87■□□□□ 0.77
LIME1-202ENST00000444951 APBA2Q99767 749 aa19.87■□□□□ 0.77
LIME1-202ENST00000444951 LLPHQ9BRT6 129 aaKnown RBP19.87■□□□□ 0.77
LIME1-202ENST00000444951 RNF26Q9BY78 433 aaPredicted RBP19.87■□□□□ 0.77
LIME1-202ENST00000444951 CCPG1Q9ULG6 757 aa19.87■□□□□ 0.77
LIME1-202ENST00000444951 ADAMTS5Q9UNA0 930 aa19.87■□□□□ 0.77
LIME1-202ENST00000444951 COL11A1P12107 1806 aaPredicted RBP19.87■□□□□ 0.77
LIME1-202ENST00000444951 DNAH12Q6ZR08 3092 aa19.87■□□□□ 0.77
LIME1-202ENST00000444951 A0A0G2JMZ2 1700 aa19.86■□□□□ 0.77
LIME1-202ENST00000444951 PPP1R11O60927 126 aaPredicted RBP19.86■□□□□ 0.77
LIME1-202ENST00000444951 FDX1P10109 184 aa19.86■□□□□ 0.77
LIME1-202ENST00000444951 MAP2K5Q13163 448 aa19.86■□□□□ 0.77
LIME1-202ENST00000444951 SNRNP48Q6IEG0 339 aaKnown RBP19.86■□□□□ 0.77
LIME1-202ENST00000444951 MB21D1Q8N884 522 aa19.86■□□□□ 0.77
LIME1-202ENST00000444951 REPS2Q8NFH8 660 aa19.86■□□□□ 0.77
LIME1-202ENST00000444951 MTMR8Q96EF0 704 aa19.86■□□□□ 0.77
LIME1-202ENST00000444951 HOMER2Q9NSB8 354 aa19.86■□□□□ 0.77
LIME1-202ENST00000444951 ZMYND8Q9ULU4 1186 aaPredicted RBP19.86■□□□□ 0.77
LIME1-202ENST00000444951 SMC3Q9UQE7 1217 aa19.86■□□□□ 0.77
LIME1-202ENST00000444951 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.86■□□□□ 0.77
LIME1-202ENST00000444951 ZNF536O15090 1300 aa19.85■□□□□ 0.77
LIME1-202ENST00000444951 ICAM1P05362 532 aa19.85■□□□□ 0.77
LIME1-202ENST00000444951 ALAS1P13196 640 aa19.85■□□□□ 0.77
LIME1-202ENST00000444951 WDR78Q5VTH9 848 aa19.85■□□□□ 0.77
LIME1-202ENST00000444951 LHX8Q68G74 356 aa19.85■□□□□ 0.77
LIME1-202ENST00000444951 AIFM3Q96NN9 605 aa19.85■□□□□ 0.77
LIME1-202ENST00000444951 AMNQ9BXJ7 453 aa19.85■□□□□ 0.77
LIME1-202ENST00000444951 C11orf49Q9H6J7 331 aa19.85■□□□□ 0.77
LIME1-202ENST00000444951 DEXIO95424 95 aa19.84■□□□□ 0.77
LIME1-202ENST00000444951 SCG2P13521 617 aa19.84■□□□□ 0.77
LIME1-202ENST00000444951 PTPREP23469 700 aa19.84■□□□□ 0.77
LIME1-202ENST00000444951 STAT3P40763 770 aa19.84■□□□□ 0.77
LIME1-202ENST00000444951 PKN1Q16512 942 aa19.84■□□□□ 0.77
LIME1-202ENST00000444951 WWC2Q6AWC2 1192 aa19.84■□□□□ 0.77
LIME1-202ENST00000444951 TRMT44Q8IYL2 757 aaKnown RBP19.84■□□□□ 0.77
LIME1-202ENST00000444951 FAM184AQ8NB25 1140 aa19.84■□□□□ 0.77
LIME1-202ENST00000444951 SMARCC2Q8TAQ2 1214 aa19.84■□□□□ 0.77
LIME1-202ENST00000444951 NPLOC4Q8TAT6 608 aa19.84■□□□□ 0.77
LIME1-202ENST00000444951 SPATC1LQ9H0A9 340 aa19.84■□□□□ 0.77
LIME1-202ENST00000444951 CWC22Q9HCG8 908 aaKnown RBP19.84■□□□□ 0.77
LIME1-202ENST00000444951 DAXXQ9UER7 740 aaPredicted RBP19.84■□□□□ 0.77
LIME1-202ENST00000444951 ZNF214Q9UL59 606 aaPredicted RBP19.84■□□□□ 0.77
LIME1-202ENST00000444951 PCDHA1Q9Y5I3 950 aa19.84■□□□□ 0.77
LIME1-202ENST00000444951 STK36Q9NRP7 1315 aa19.83■□□□□ 0.77
LIME1-202ENST00000444951 MYH6P13533 1939 aa19.83■□□□□ 0.77
LIME1-202ENST00000444951 SOX1O00570 391 aaPredicted RBP19.83■□□□□ 0.77
LIME1-202ENST00000444951 FDPSP14324 419 aaKnown RBP19.83■□□□□ 0.77
LIME1-202ENST00000444951 SYN1P17600 705 aa19.83■□□□□ 0.77
LIME1-202ENST00000444951 GJB2P29033 226 aa19.83■□□□□ 0.77
LIME1-202ENST00000444951 GRB14Q14449 540 aa19.83■□□□□ 0.77
LIME1-202ENST00000444951 PFKFB3Q16875 520 aaPredicted RBP19.83■□□□□ 0.77
LIME1-202ENST00000444951 NCAPG2Q86XI2 1143 aa19.83■□□□□ 0.77
LIME1-202ENST00000444951 ALG1Q9BT22 464 aa19.83■□□□□ 0.77
LIME1-202ENST00000444951 MOV10L1Q9BXT6 1211 aaKnown RBP19.83■□□□□ 0.77
LIME1-202ENST00000444951 TEX13BQ9BXU2 312 aa19.83■□□□□ 0.77
LIME1-202ENST00000444951 RIPK3Q9Y572 518 aa19.83■□□□□ 0.77
LIME1-202ENST00000444951 SLC15A5A6NIM6 579 aa19.82■□□□□ 0.76
LIME1-202ENST00000444951 OAZ1P54368 228 aa19.82■□□□□ 0.76
LIME1-202ENST00000444951 NAPAP54920 295 aa19.82■□□□□ 0.76
LIME1-202ENST00000444951 CCNA1P78396 465 aa19.82■□□□□ 0.76
LIME1-202ENST00000444951 HMGN5P82970 282 aaKnown RBP19.82■□□□□ 0.76
LIME1-202ENST00000444951 VPS54Q9P1Q0 977 aa19.82■□□□□ 0.76
LIME1-202ENST00000444951 COL6A1P12109 1028 aa19.81■□□□□ 0.76
LIME1-202ENST00000444951 TRPV1Q8NER1 839 aa19.81■□□□□ 0.76
LIME1-202ENST00000444951 WASF1Q92558 559 aa19.81■□□□□ 0.76
LIME1-202ENST00000444951 TRERF1Q96PN7 1200 aa19.81■□□□□ 0.76
LIME1-202ENST00000444951 GDF15Q99988 308 aa19.81■□□□□ 0.76
LIME1-202ENST00000444951 GJB4Q9NTQ9 266 aa19.81■□□□□ 0.76
LIME1-202ENST00000444951 RNF146Q9NTX7 359 aa19.81■□□□□ 0.76
LIME1-202ENST00000444951 ABCB11O95342 1321 aa19.8■□□□□ 0.76
LIME1-202ENST00000444951 STXBP3O00186 592 aa19.8■□□□□ 0.76
LIME1-202ENST00000444951 ATP2A1O14983 1001 aa19.8■□□□□ 0.76
LIME1-202ENST00000444951 IGHA2P01877 340 aa19.8■□□□□ 0.76
LIME1-202ENST00000444951 HOXC6P09630 235 aa19.8■□□□□ 0.76
LIME1-202ENST00000444951 ERCC3P19447 782 aa19.8■□□□□ 0.76
LIME1-202ENST00000444951 CYP2C19P33261 490 aa19.8■□□□□ 0.76
LIME1-202ENST00000444951 MUM1L1Q5H9M0 696 aa19.8■□□□□ 0.76
LIME1-202ENST00000444951 RIOX2Q8IUF8 465 aa19.8■□□□□ 0.76
LIME1-202ENST00000444951 INTS4Q96HW7 963 aaKnown RBP19.8■□□□□ 0.76
LIME1-202ENST00000444951 LRCH3Q96II8 777 aa19.8■□□□□ 0.76
LIME1-202ENST00000444951 ZNF236Q9UL36 1845 aa19.8■□□□□ 0.76
LIME1-202ENST00000444951 GUCY1B3Q02153 619 aa19.79■□□□□ 0.76
LIME1-202ENST00000444951 TRAF1Q13077 416 aa19.79■□□□□ 0.76
LIME1-202ENST00000444951 LRRC26Q2I0M4 334 aa19.79■□□□□ 0.76
LIME1-202ENST00000444951 TYW1BQ6NUM6 668 aa19.79■□□□□ 0.76
LIME1-202ENST00000444951 BARHL2Q9NY43 387 aa19.79■□□□□ 0.76
LIME1-202ENST00000444951 MRPL11Q9Y3B7 192 aaKnown RBP19.79■□□□□ 0.76
LIME1-202ENST00000444951 COL6A3P12111 3177 aa19.78■□□□□ 0.76
LIME1-202ENST00000444951 NFIBO00712 420 aa19.78■□□□□ 0.76
LIME1-202ENST00000444951 SLC25A27O95847 323 aa19.78■□□□□ 0.76
LIME1-202ENST00000444951 TRIM29Q14134 588 aa19.78■□□□□ 0.76
LIME1-202ENST00000444951 MFSD14CQ5VZR4 134 aa19.78■□□□□ 0.76
LIME1-202ENST00000444951 NSMFQ6X4W1 530 aa19.78■□□□□ 0.76
LIME1-202ENST00000444951 PNMA2Q9UL42 364 aa19.78■□□□□ 0.76
LIME1-202ENST00000444951 KCNJ14Q9UNX9 436 aa19.78■□□□□ 0.76
LIME1-202ENST00000444951 KIF3AQ9Y496 699 aa19.78■□□□□ 0.76
LIME1-202ENST00000444951 IVNS1ABPQ9Y6Y0 642 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms