RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 WDR4P57081 412 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 CABP4P57796 275 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 ICA1Q05084 483 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 NEUROD1Q13562 356 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 ZNF267Q14586 743 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 SEPT2Q15019 361 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 TRIM61Q5EBN2 209 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 NOL9Q5SY16 702 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 CFAP58Q5T655 872 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 VPS53Q5VIR6 699 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 CEP135Q66GS9 1140 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 SNX32Q86XE0 403 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 CMTR2Q8IYT2 770 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 NKAPQ8N5F7 415 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 TMEM102Q8N9M5 508 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 ZBTB34Q8NCN2 500 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 FAM156AQ8NDB6 213 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 OSBP2Q969R2 916 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 SGCZQ96LD1 299 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 CENPOQ9BU64 300 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 BHLHE41Q9C0J9 482 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 VTA1Q9NP79 307 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 EMC7Q9NPA0 242 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 C11orf16Q9NQ32 467 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 LOC101059915A0A1B0GWI6 518 aaPredicted RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 K7ENM7 598 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 CBFA2T2O43439 604 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 CLEC3AO75596 197 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 XBP1P17861 261 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 GPC1P35052 558 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PDE3AQ14432 1141 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 EFHC2Q5JST6 749 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 C1QTNF12Q5T7M4 302 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 DUSP27Q5VZP5 1158 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 OTOP3Q7RTS5 596 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 MAMDC2Q7Z304 686 aaPredicted RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 SLC41A1Q8IVJ1 513 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 IGSF22Q8N9C0 903 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 BVESQ8NE79 360 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ATXN2LQ8WWM7 1075 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 BSNDQ8WZ55 320 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 BHMTQ93088 406 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PLPPR2Q96GM1 343 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 TTC14Q96N46 770 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 FAM193BQ96PV7 902 aaPredicted RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 TLR7Q9NYK1 1049 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 APEX2Q9UBZ4 518 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 DNM3Q9UQ16 869 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 SLC45A1Q9Y2W3 748 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 NOC2LQ9Y3T9 749 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 TTLL3Q9Y4R7 772 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 MAGED1Q9Y5V3 778 aaPredicted RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 A0A1B0GTH6 734 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 GOLGA6L6A8MZA4 724 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 KRT37O76014 449 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 SRGAP2CP0DJJ0 459 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 RHOQP17081 205 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 EIF2AK2P19525 551 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 LSSP48449 732 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 CDK8P49336 464 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 YARSP54577 528 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PPFIA1Q13136 1202 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PRKG2Q13237 762 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ODF1Q14990 250 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 WDR45BQ5MNZ6 344 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 HFE2Q6ZVN8 426 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 STK35Q8TDR2 534 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 SLC5A5Q92911 643 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ZCCHC2Q9C0B9 1178 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 SH3GLB2Q9NR46 395 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 MRGBPQ9NV56 204 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PPP1R9AQ9ULJ8 1098 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 RHPN2P1A8MT19 583 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 CHURC1-FNTBB4DL54 471 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 TNFRSF10CO14798 259 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ZBED1O96006 694 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ABCB4P21439 1286 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 GRK2P25098 689 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 TECP42680 631 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PMS1P54277 932 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PTPN5P54829 565 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 BLMHQ13867 455 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 STARD3Q14849 445 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 CDC37Q16543 378 aaPredicted RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 CCDC30Q5VVM6 783 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PDXDC1Q6P996 788 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 MPRIPQ6WCQ1 1025 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PTRH1Q86Y79 214 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ARL10Q8N8L6 244 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 CEP120Q8N960 986 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 SMC1BQ8NDV3 1235 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 DEPTORQ8TB45 409 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 CHTF18Q8WVB6 975 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 DIO2Q92813 273 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ZBTB10Q96DT7 871 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ITPKCQ96DU7 683 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 SCLYQ96I15 445 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PAWRQ96IZ0 340 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 RIPOR3Q96MK2 946 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 TIGD1Q96MW7 591 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms