RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-208ENST00000437607 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-208ENST00000437607 SOWAHBA6NEL2 793 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 TMEM232C9JQI7 657 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 PTGS1P23219 599 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 RPS6KB1P23443 525 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 DNAJB2P25686 324 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 NT5C2P49902 561 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 NKX3-2P78367 333 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 FGD1P98174 961 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 BEX3Q00994 111 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 TMEM240Q5SV17 173 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 RUFY3Q7L099 469 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 FAM126BQ8IXS8 530 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 USP38Q8NB14 1042 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 PCSK9Q8NBP7 692 aaKnown RBP14.17□□□□□ -0.14
PTPRF-208ENST00000437607 ESR2Q92731 530 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 ZSWIM6Q9HCJ5 1215 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 HOMER2Q9NSB8 354 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 FBXO40Q9UH90 709 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 DDX49Q9Y6V7 483 aaKnown RBP14.17□□□□□ -0.14
PTPRF-208ENST00000437607 KIAA1217Q5T5P2 1943 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 MROH7Q68CQ1 1323 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 TANC1Q9C0D5 1861 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 SCN10AQ9Y5Y9 1956 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 A0A0U1RQG5 324 aaPredicted RBP14.16□□□□□ -0.14
PTPRF-208ENST00000437607 GRXCR1A8MXD5 290 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 B4E1Z4 1266 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 ARVCFO00192 962 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 CD4P01730 458 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 CSF2RAP15509 400 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 MCM5P33992 734 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 PBX2P40425 430 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 TFAP4Q01664 338 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 GNASQ5JWF2 1037 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 RASGRP2Q7LDG7 609 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 MB21D2Q8IYB1 491 aaPredicted RBP14.16□□□□□ -0.14
PTPRF-208ENST00000437607 CHMP4CQ96CF2 233 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 AGBL1Q96MI9 1066 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 ACAD9Q9H845 621 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 A1CFQ9NQ94 594 aaKnown RBP14.16□□□□□ -0.14
PTPRF-208ENST00000437607 PDRG1Q9NUG6 133 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 CTDP1Q9Y5B0 961 aaPredicted RBP14.16□□□□□ -0.14
PTPRF-208ENST00000437607 BDP1A6H8Y1 2624 aa14.16□□□□□ -0.14
PTPRF-208ENST00000437607 WDR19Q8NEZ3 1342 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 MYH7BA7E2Y1 1941 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 TET1Q8NFU7 2136 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 ORC4O43929 436 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 TSPY3P0CV98 308 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 TSPY8P0CW00 308 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 ACRP10323 421 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 CPA1P15085 419 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 MCM2P49736 904 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 STAT2P52630 851 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 SART3Q15020 963 aaKnown RBP14.15□□□□□ -0.14
PTPRF-208ENST00000437607 ANKRD1Q15327 319 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 TMEM63BQ5T3F8 832 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 DHX32Q7L7V1 743 aaKnown RBP14.15□□□□□ -0.14
PTPRF-208ENST00000437607 TIFAQ96CG3 184 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 GMCL1Q96IK5 515 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 PPP1R12CQ9BZL4 782 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 ZNF576Q9H609 170 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 SPC25Q9HBM1 224 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 INCENPQ9NQS7 918 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 RNF146Q9NTX7 359 aa14.15□□□□□ -0.14
PTPRF-208ENST00000437607 GNEQ9Y223 722 aaKnown RBP14.15□□□□□ -0.14
PTPRF-208ENST00000437607 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.15□□□□□ -0.14
PTPRF-208ENST00000437607 GRIN2DO15399 1336 aa14.15□□□□□ -0.15
PTPRF-208ENST00000437607 PRC1O43663 620 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 NMT2O60551 498 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 KDM4AO75164 1064 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 FDX1P10109 184 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 CYP2C18P33260 490 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 SNAP25P60880 206 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 TNFAIP2Q03169 654 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 PPIGQ13427 754 aaKnown RBP eCLIP14.14□□□□□ -0.154e-7■□□□□ 11
PTPRF-208ENST00000437607 MUM1L1Q5H9M0 696 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 ZNF365Q70YC5 407 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 NOL8Q76FK4 1167 aaKnown RBP14.14□□□□□ -0.15
PTPRF-208ENST00000437607 SLC43A3Q8NBI5 491 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 VTI1AQ96AJ9 217 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 UBAC1Q9BSL1 405 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 PBX4Q9BYU1 374 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 IL17RBQ9NRM6 502 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 DAXXQ9UER7 740 aaPredicted RBP14.14□□□□□ -0.15
PTPRF-208ENST00000437607 UMODL1Q5DID0 1318 aa14.14□□□□□ -0.15
PTPRF-208ENST00000437607 ERICH2A1L162 156 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 TSPY2A6NKD2 308 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 RANBP6O60518 1105 aaKnown RBP14.13□□□□□ -0.15
PTPRF-208ENST00000437607 PLA2G6O60733 806 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 TAPT1Q6NXT6 567 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 CXCL17Q6UXB2 119 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 KCTD1Q719H9 257 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 FAM160B2Q86V87 743 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 IQCA1Q86XH1 822 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 CHURC1Q8WUH1 139 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 SNX21Q969T3 373 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 TCEANC2Q96MN5 208 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 TTC14Q96N46 770 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 TRERF1Q96PN7 1200 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms