RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 ADKP55263 362 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 HS1BP3Q53T59 392 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 WDR17Q8IZU2 1322 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 CROCCQ5TZA2 2017 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 RGS16O15492 202 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 IREB2P48200 963 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 ADAT2Q7Z6V5 191 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 RAD17O75943 681 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 RBBP5Q15291 538 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 TTLL7Q6ZT98 887 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 PTPN22Q9Y2R2 807 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 LMNB1P20700 586 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 TSNAXIP1Q2TAA8 658 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 ZNF577Q9BSK1 485 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 PTPRTO14522 1441 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 ADORA1P30542 326 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 IFNL3Q8IZI9 196 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 UBN1Q9NPG3 1134 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 GDF11O95390 407 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 SRGAP2BP0DMP2 458 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 VPS41P49754 854 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 CYP4A11Q02928 519 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 RAB3IPQ96QF0 476 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 KIAA1024Q9UPX6 916 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 KCNK3O14649 394 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 CASP2P42575 452 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 SEC24BO95487 1268 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 NCAPGQ9BPX3 1015 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 ADD3Q9UEY8 706 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 PALD1Q9ULE6 856 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 SSH2Q76I76 1423 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 RPN1P04843 607 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 GCNAQ96QF7 691 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 RABEP2Q9H5N1 569 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 KRT3P12035 628 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 PHKG2P15735 406 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 EIF4A1P60842 406 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 ME3Q16798 604 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 ODR4Q5SWX8 454 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 KRBA2Q6ZNG9 492 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 TTC30AQ86WT1 665 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 MAIP1Q8WWC4 291 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 PPP1R16BQ96T49 567 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 DBNDD1Q9H9R9 158 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 PPME1Q9Y570 386 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 DTNBO60941 627 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 USP14P54578 494 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 CCDC88AQ3V6T2 1871 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 ANXA13P27216 316 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 UBXN2AP68543 259 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 ELF2Q15723 593 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 MCTP2Q6DN12 878 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 CAPN12Q6ZSI9 719 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 TNKSO95271 1327 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 NSFP46459 744 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 KRT71Q3SY84 523 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 ATP6V0A1Q93050 837 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 SLC39A2Q9NP94 309 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 SLFN13Q68D06 897 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 GALNT17Q6IS24 598 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 GCNT4Q9P109 453 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 GJA10Q969M2 543 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 GREM2Q9H772 168 aa13.17□□□□□ -0.3
CCDC88A-207ENST00000436346 NUB1Q9Y5A7 615 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 COL4A3BPQ9Y5P4 624 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 MYO1EQ12965 1108 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 ARMCX5Q6P1M9 558 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 SLC7A3Q8WY07 619 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 PHLDB2Q86SQ0 1253 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 NPHP4O75161 1426 aaPredicted RBP13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 GADD45BO75293 160 aaPredicted RBP13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 JADE1Q6IE81 842 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 ARMC9Q7Z3E5 817 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 TAB3Q8N5C8 712 aaPredicted RBP13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 HDAC11Q96DB2 347 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 MAD1L1Q9Y6D9 718 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 CARMIL3Q8ND23 1372 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 ZSCAN20P17040 1043 aaPredicted RBP13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 DDIT3P35638 169 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 HADHQ16836 314 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 METTL23Q86XA0 190 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 SYMPKQ92797 1274 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 SUPT20HL1Q3ZLR7 823 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 GDAP1L1Q96MZ0 367 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 SGK1O00141 431 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 TFAMQ00059 246 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 ASPRV1Q53RT3 343 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 USPL1Q5W0Q7 1092 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 EFCC1Q9HA90 598 aa13.16□□□□□ -0.3
CCDC88A-207ENST00000436346 MARK3P27448 753 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 NLGN1Q8N2Q7 840 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 C17orf53Q8N3J3 647 aaPredicted RBP13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 SEMA3EO15041 775 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 ARHGAP6O43182 974 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 BUB1O43683 1085 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 C1orf228Q6PIY5 440 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 GBP7Q8N8V2 638 aaPredicted RBP13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 CTNNA1P35221 906 aaKnown RBP13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 EDC3Q96F86 508 aaKnown RBP13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 PPP1R12CQ9BZL4 782 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms