RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 PRPF40AO75400 957 aaKnown RBP12.92□□□□□ -0.34
LINC00539-203ENST00000434601 TFRCP02786 760 aaKnown RBP12.92□□□□□ -0.34
LINC00539-203ENST00000434601 INHAP05111 366 aa12.92□□□□□ -0.34
LINC00539-203ENST00000434601 SPP2Q13103 211 aa12.92□□□□□ -0.34
LINC00539-203ENST00000434601 NR5A1Q13285 461 aa12.92□□□□□ -0.34
LINC00539-203ENST00000434601 CHRDL2Q6WN34 429 aa12.92□□□□□ -0.34
LINC00539-203ENST00000434601 FAM160B2Q86V87 743 aa12.92□□□□□ -0.34
LINC00539-203ENST00000434601 OXER1Q8TDS5 423 aa12.92□□□□□ -0.34
LINC00539-203ENST00000434601 USP28Q96RU2 1077 aa12.92□□□□□ -0.34
LINC00539-203ENST00000434601 PCDHA4Q9UN74 947 aa12.92□□□□□ -0.34
LINC00539-203ENST00000434601 ELP1O95163 1332 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 PARP14Q460N5 1801 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 PPP1R11O60927 126 aaPredicted RBP12.91□□□□□ -0.34
LINC00539-203ENST00000434601 ELNP15502 786 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 BACE1P56817 501 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 QRICH1Q2TAL8 776 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 BLIDQ8IZY5 108 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 CHURC1Q8WUH1 139 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 LEO1Q8WVC0 666 aaPredicted RBP12.91□□□□□ -0.34
LINC00539-203ENST00000434601 TNFRSF25Q93038 417 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 SPATA32Q96LK8 384 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 C12orf42Q96LP6 360 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 ZMYND12Q9H0C1 365 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 TFIP11Q9UBB9 837 aaKnown RBP12.91□□□□□ -0.34
LINC00539-203ENST00000434601 FEM1BQ9UK73 627 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 PRR12Q9ULL5 1215 aa12.91□□□□□ -0.34
LINC00539-203ENST00000434601 VCAM1P19320 739 aa12.9□□□□□ -0.34
LINC00539-203ENST00000434601 GNA11P29992 359 aa12.9□□□□□ -0.34
LINC00539-203ENST00000434601 SKOR2Q2VWA4 1001 aaPredicted RBP12.9□□□□□ -0.34
LINC00539-203ENST00000434601 SH3D19Q5HYK7 790 aa12.9□□□□□ -0.34
LINC00539-203ENST00000434601 TREML2Q5T2D2 321 aa12.9□□□□□ -0.34
LINC00539-203ENST00000434601 DEFB118Q96PH6 123 aa12.9□□□□□ -0.34
LINC00539-203ENST00000434601 FTOQ9C0B1 505 aaKnown RBP eCLIP12.9□□□□□ -0.34
LINC00539-203ENST00000434601 C6orf50Q9HD87 102 aa12.9□□□□□ -0.34
LINC00539-203ENST00000434601 PAK6Q9NQU5 681 aaPredicted RBP12.9□□□□□ -0.34
LINC00539-203ENST00000434601 POLR3EQ9NVU0 708 aa12.9□□□□□ -0.34
LINC00539-203ENST00000434601 RTEL1Q9NZ71 1219 aa12.9□□□□□ -0.34
LINC00539-203ENST00000434601 SMCO2A6NFE2 343 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 C19orf81C9J6K1 198 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 TRAK2O60296 914 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 EVI5O60447 810 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 YEATS4O95619 227 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 NASPP49321 788 aaPredicted RBP12.89□□□□□ -0.35
LINC00539-203ENST00000434601 HMGCS2P54868 508 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 UBE2HP62256 183 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 CEBPZQ03701 1054 aaKnown RBP12.89□□□□□ -0.35
LINC00539-203ENST00000434601 RILPL1Q5EBL4 403 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 ANO1Q5XXA6 986 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 BICD2Q8TD16 824 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 KIFC2Q96AC6 838 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 RANBP17Q9H2T7 1088 aaKnown RBP12.89□□□□□ -0.35
LINC00539-203ENST00000434601 RPAP3Q9H6T3 665 aaPredicted RBP12.89□□□□□ -0.35
LINC00539-203ENST00000434601 EMILIN3Q9NT22 766 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 TMOD4Q9NZQ9 345 aa12.89□□□□□ -0.35
LINC00539-203ENST00000434601 NOL7Q9UMY1 257 aaKnown RBP12.89□□□□□ -0.35
LINC00539-203ENST00000434601 SZT2Q5T011 3432 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 A0A1W2PPC1 479 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 FAM205CA6NFA0 338 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 M0R2N6 131 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 MBD3O95983 291 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 HMGCRP04035 888 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 ADCY7P51828 1080 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 IRX3P78415 501 aaPredicted RBP12.88□□□□□ -0.35
LINC00539-203ENST00000434601 STK38Q15208 465 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 EARS2Q5JPH6 523 aaKnown RBP12.88□□□□□ -0.35
LINC00539-203ENST00000434601 PIK3AP1Q6ZUJ8 805 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 NECAB2Q7Z6G3 386 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 FBXO11Q86XK2 927 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 ANKLE1Q8NAG6 615 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 RASGRP4Q8TDF6 673 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 SLF1Q9BQI6 1058 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 AMNQ9BXJ7 453 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 TANGO6Q9C0B7 1094 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 CRISPLD2Q9H0B8 497 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 ASCC2Q9H1I8 757 aaPredicted RBP12.88□□□□□ -0.35
LINC00539-203ENST00000434601 FBXO28Q9NVF7 368 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 RCOR1Q9UKL0 485 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 CLIC4Q9Y696 253 aa12.88□□□□□ -0.35
LINC00539-203ENST00000434601 DDX49Q9Y6V7 483 aaKnown RBP12.88□□□□□ -0.35
LINC00539-203ENST00000434601 CCDC194A0A1B0GVG4 234 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 ADAMTS3O15072 1205 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 GADD45BO75293 160 aaPredicted RBP12.87□□□□□ -0.35
LINC00539-203ENST00000434601 HOXA7P31268 230 aaPredicted RBP12.87□□□□□ -0.35
LINC00539-203ENST00000434601 TRAPPC10P48553 1259 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 TOB1P50616 345 aaPredicted RBP12.87□□□□□ -0.35
LINC00539-203ENST00000434601 SNAP25P60880 206 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 TRAF1Q13077 416 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 SF3A1Q15459 793 aaKnown RBP12.87□□□□□ -0.35
LINC00539-203ENST00000434601 KLHL40Q2TBA0 621 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 KRT25Q7Z3Z0 450 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 REXO1Q8N1G1 1221 aaKnown RBP12.87□□□□□ -0.35
LINC00539-203ENST00000434601 LINC00301Q8NCQ3 95 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 KCNG4Q8TDN1 519 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 CUL5Q93034 780 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.87□□□□□ -0.35
LINC00539-203ENST00000434601 GLT8D2Q9H1C3 349 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 HMX1Q9NP08 348 aaPredicted RBP12.87□□□□□ -0.35
LINC00539-203ENST00000434601 RIC8AQ9NPQ8 531 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 MORF4L1Q9UBU8 362 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 PCDHA6Q9UN73 950 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms