RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 CHP1Q99653 195 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 EPC1Q9H2F5 836 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 SEC63Q9UGP8 760 aaKnown RBP15.28■□□□□ 0.04
COL6A3-207ENST00000433762 PUF60Q9UHX1 559 aaKnown RBP15.28■□□□□ 0.04
COL6A3-207ENST00000433762 SOGA3Q5TF21 947 aa15.27■□□□□ 0.04
COL6A3-207ENST00000433762 RIOX1Q9H6W3 641 aa15.27■□□□□ 0.04
COL6A3-207ENST00000433762 QSER1Q2KHR3 1735 aa15.27■□□□□ 0.04
COL6A3-207ENST00000433762 GNPATO15228 680 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 CDK8P49336 464 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 HERVK_113P62684 666 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 PDE4DQ08499 809 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 TXNRD1Q16881 649 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 CENPPQ6IPU0 288 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 TGFBRAP1Q8WUH2 860 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 EYA3Q99504 573 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 RAB34Q9BZG1 259 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 EDEM3Q9BZQ6 932 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 ANKIB1Q9P2G1 1089 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 SRP68Q9UHB9 627 aaKnown RBP15.27■□□□□ 0.03
COL6A3-207ENST00000433762 GAKO14976 1311 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 MYO3BQ8WXR4 1341 aa15.27■□□□□ 0.03
COL6A3-207ENST00000433762 SMCO2A6NFE2 343 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 ATP2B4P23634 1241 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 ITIH3Q06033 890 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 PDIA5Q14554 519 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 MAP9Q49MG5 647 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 FKBP15Q5T1M5 1219 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 IQCEQ6IPM2 695 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 TBC1D22AQ8WUA7 517 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 CNOT6LQ96LI5 555 aaKnown RBP15.26■□□□□ 0.03
COL6A3-207ENST00000433762 PNKPQ96T60 521 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 MED4Q9NPJ6 270 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 STX8Q9UNK0 236 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 SAR1BQ9Y6B6 198 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 PP2D1A8MPX8 630 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 TRIM21P19474 475 aaKnown RBP15.26■□□□□ 0.03
COL6A3-207ENST00000433762 TBC1D8BQ0IIM8 1120 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 PSMD2Q13200 908 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 SEPT2Q15019 361 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 ASPRV1Q53RT3 343 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 FAM182BQ5T319 152 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 REXO1Q8N1G1 1221 aaKnown RBP15.26■□□□□ 0.03
COL6A3-207ENST00000433762 MAPK8IP1Q9UQF2 711 aa15.26■□□□□ 0.03
COL6A3-207ENST00000433762 ATAD5Q96QE3 1844 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 LTBP1Q14766 1721 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 LCA5LO95447 670 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 ADRA2BP18089 450 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 ASIC1P78348 528 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 LRRC63Q05C16 580 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 CCDC122Q5T0U0 273 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 UNC13DQ70J99 1090 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 GUF1Q8N442 669 aaKnown RBP15.25■□□□□ 0.03
COL6A3-207ENST00000433762 MTMR9Q96QG7 549 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 B4DLN1 442 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 CCNT1O60563 726 aaKnown RBP15.25■□□□□ 0.03
COL6A3-207ENST00000433762 BTDP43251 543 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 USP14P54578 494 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 TMEM266Q2M3C6 531 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 MIIPQ5JXC2 388 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 ANKRD40Q6AI12 368 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 SV2BQ7L1I2 683 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 ZNF572Q7Z3I7 529 aaPredicted RBP15.25■□□□□ 0.03
COL6A3-207ENST00000433762 CCDC84Q86UT8 332 aaPredicted RBP15.25■□□□□ 0.03
COL6A3-207ENST00000433762 LRRC15Q8TF66 581 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 ARHGEF1Q92888 912 aaKnown RBP15.25■□□□□ 0.03
COL6A3-207ENST00000433762 JAKMIP2Q96AA8 810 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 MMTAG2Q9BU76 263 aaKnown RBP15.25■□□□□ 0.03
COL6A3-207ENST00000433762 ABCB6Q9NP58 842 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 GUCA1BQ9UMX6 200 aa15.25■□□□□ 0.03
COL6A3-207ENST00000433762 GREB1LQ9C091 1923 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-207ENST00000433762 COBLO75128 1261 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 PRLRP16471 622 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 VAV2P52735 878 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 CRY2Q49AN0 593 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 KIAA1328Q86T90 577 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 FAM71BQ8TC56 605 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 PODXL2Q9NZ53 605 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 PLAGL2Q9UPG8 496 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 SUGT1Q9Y2Z0 365 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 POLR3GO15318 223 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-207ENST00000433762 ABL1P00519 1130 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 SNHG28P0DPA3 235 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 MTIF2P46199 727 aaKnown RBP15.24■□□□□ 0.03
COL6A3-207ENST00000433762 DIXDC1Q155Q3 683 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 LETM2Q2VYF4 491 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 TEX11Q8IYF3 940 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 PROM2Q8N271 834 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 NAP1L4Q99733 375 aaKnown RBP15.24■□□□□ 0.03
COL6A3-207ENST00000433762 NOC4LQ9BVI4 516 aaKnown RBP15.24■□□□□ 0.03
COL6A3-207ENST00000433762 ZSWIM4Q9H7M6 989 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 NHEJ1Q9H9Q4 299 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-207ENST00000433762 CD209Q9NNX6 404 aa15.24■□□□□ 0.03
COL6A3-207ENST00000433762 CCNL1Q9UK58 526 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-207ENST00000433762 RASSF10A6NK89 507 aa15.23■□□□□ 0.03
COL6A3-207ENST00000433762 AARSP49588 968 aaKnown RBP eCLIP15.23■□□□□ 0.03
COL6A3-207ENST00000433762 VSNL1P62760 191 aa15.23■□□□□ 0.03
COL6A3-207ENST00000433762 STK4Q13043 487 aa15.23■□□□□ 0.03
COL6A3-207ENST00000433762 MAPKAPK5Q8IW41 473 aa15.23■□□□□ 0.03
COL6A3-207ENST00000433762 TBCKQ8TEA7 893 aa15.23■□□□□ 0.03
COL6A3-207ENST00000433762 RIC8AQ9NPQ8 531 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms