RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 LONP1P36776 959 aaKnown RBP13.88□□□□□ -0.19
CDH3-202ENST00000429102 RNF187Q5TA31 235 aaPredicted RBP13.88□□□□□ -0.19
CDH3-202ENST00000429102 LRRC47Q8N1G4 583 aaKnown RBP13.88□□□□□ -0.19
CDH3-202ENST00000429102 MARCH10Q8NA82 808 aaPredicted RBP13.88□□□□□ -0.19
CDH3-202ENST00000429102 HNRNPLLQ8WVV9 542 aaKnown RBP13.88□□□□□ -0.19
CDH3-202ENST00000429102 PIGSQ96S52 555 aa13.88□□□□□ -0.19
CDH3-202ENST00000429102 CAPN11Q9UMQ6 739 aa13.88□□□□□ -0.19
CDH3-202ENST00000429102 SCN11AQ9UI33 1791 aa13.88□□□□□ -0.19
CDH3-202ENST00000429102 NOP2P46087 812 aaKnown RBP13.87□□□□□ -0.19
CDH3-202ENST00000429102 GUCY2DQ02846 1103 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 RCSD1Q6JBY9 416 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 MAATS1Q7Z4T9 603 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 ADAT2Q7Z6V5 191 aaKnown RBP13.87□□□□□ -0.19
CDH3-202ENST00000429102 TICAM2Q86XR7 235 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 NFU1Q9UMS0 254 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 PCDHA13Q9Y5I0 950 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 CAMTA2O94983 1202 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 NTSR2O95665 410 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 PAFAH1B1P43034 410 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 KIF11P52732 1056 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 RPS8P62241 208 aaKnown RBP13.87□□□□□ -0.19
CDH3-202ENST00000429102 EHHADHQ08426 723 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 MUM1L1Q5H9M0 696 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.87□□□□□ -0.19
CDH3-202ENST00000429102 RAPGEF1Q13905 1077 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 TRIM14Q14142 442 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 FBXW10Q5XX13 1052 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 TTI2Q6NXR4 508 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 PTF1AQ7RTS3 328 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 NUDT12Q9BQG2 462 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 SALL4Q9UJQ4 1053 aa13.87□□□□□ -0.19
CDH3-202ENST00000429102 DDAH1O94760 285 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 CKAP4Q07065 602 aaKnown RBP13.86□□□□□ -0.19
CDH3-202ENST00000429102 UBE2SQ16763 222 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 CCNI2Q6ZMN8 369 aaPredicted RBP13.86□□□□□ -0.19
CDH3-202ENST00000429102 CALML4Q96GE6 196 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 TRIM31Q9BZY9 425 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 ARHGAP20Q9P2F6 1191 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 UTRNP46939 3433 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 LRRC10BA6NIK2 292 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 RASSF10A6NK89 507 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 ERVV-1B6SEH8 477 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 TDP2O95551 362 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 KRT18P05783 430 aaKnown RBP13.86□□□□□ -0.19
CDH3-202ENST00000429102 SLC16A2P36021 539 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 EPS15P42566 896 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 SLC1A4P43007 532 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 LLGL1Q15334 1064 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 SLC35G1Q2M3R5 365 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 C8orf74Q6P047 294 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 TSEN2Q8NCE0 465 aaKnown RBP13.86□□□□□ -0.19
CDH3-202ENST00000429102 TMEM47Q9BQJ4 181 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 TRIM9Q9C026 710 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 EPB41L5Q9HCM4 733 aa13.86□□□□□ -0.19
CDH3-202ENST00000429102 SEC63Q9UGP8 760 aaKnown RBP13.86□□□□□ -0.19
CDH3-202ENST00000429102 SEMA3EO15041 775 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 KLRC4O43908 158 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 SPATA4Q8NEY3 305 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 KRT12Q99456 494 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 RBM12Q9NTZ6 932 aaKnown RBP13.85□□□□□ -0.19
CDH3-202ENST00000429102 ITIH6Q6UXX5 1313 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 NPHP3-ACAD11A0A0J9YXS1 232 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 OR52Z1P0C646 297 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 POLR2FP61218 127 aaKnown RBP13.85□□□□□ -0.19
CDH3-202ENST00000429102 TCERG1LQ5VWI1 586 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 TBC1D9BQ66K14 1250 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 AMOTL1Q8IY63 956 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 CCDC43Q96MW1 224 aaKnown RBP13.85□□□□□ -0.19
CDH3-202ENST00000429102 SEMA6BQ9H3T3 888 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 KCPQ6ZWJ8 1503 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 MYH2Q9UKX2 1941 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 MYH15Q9Y2K3 1946 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 NDUFAB1O14561 156 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 CCNE1P24864 410 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 CARSP49589 748 aaKnown RBP13.85□□□□□ -0.19
CDH3-202ENST00000429102 MNAT1P51948 309 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 ZBED6P86452 979 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 ELOA2Q8IYF1 753 aaPredicted RBP13.85□□□□□ -0.19
CDH3-202ENST00000429102 SNX29Q8TEQ0 813 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 NLRP3Q96P20 1036 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 NDST4Q9H3R1 872 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 ADAMTS1Q9UHI8 967 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 BCS1LQ9Y276 419 aa13.85□□□□□ -0.19
CDH3-202ENST00000429102 TMCO5BA8MYB1 307 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 PSMD14O00487 310 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 MPHOSPH10O00566 681 aaKnown RBP13.84□□□□□ -0.19
CDH3-202ENST00000429102 LDHBP07195 334 aaKnown RBP13.84□□□□□ -0.19
CDH3-202ENST00000429102 SRGNP10124 158 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 NAA35Q5VZE5 725 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 SV2BQ7L1I2 683 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 C4orf32Q8N8J7 132 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 OR2W6PQ8NHA6 318 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 CAPS2Q9BXY5 557 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 MED4Q9NPJ6 270 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 HYOU1Q9Y4L1 999 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 COL5A2P05997 1499 aaPredicted RBP13.84□□□□□ -0.19
CDH3-202ENST00000429102 EBAG9O00559 213 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 FAM153BP0C7A2 387 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 EEF1GP26641 437 aaKnown RBP13.84□□□□□ -0.19
CDH3-202ENST00000429102 GUCY1A3Q02108 690 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms