RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 KIAA1755Q5JYT7 1200 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 SYDE2Q5VT97 1194 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 SPATA1Q5VX52 437 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 CCDC84Q86UT8 332 aaPredicted RBP11.72□□□□□ -0.53
HDAC9-210ENST00000428307 CREBRFQ8IUR6 639 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 AMNQ9BXJ7 453 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 MTFR1LQ9H019 292 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 VPS33BQ9H267 617 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 KBTBD4Q9NVX7 518 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 MYH8P13535 1937 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 SIPA1L1O43166 1804 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 GOLGA8FQ08AF8 430 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 GOLGA8DPQ0D2H9 430 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 TPD52L1Q16890 204 aaPredicted RBP11.72□□□□□ -0.53
HDAC9-210ENST00000428307 ZNF658Q5TYW1 1059 aaPredicted RBP11.72□□□□□ -0.53
HDAC9-210ENST00000428307 FBXO11Q86XK2 927 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 MYOZ2Q9NPC6 264 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 RMND1Q9NWS8 449 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 ZBTB21Q9ULJ3 1066 aa11.72□□□□□ -0.53
HDAC9-210ENST00000428307 NFKBIEO00221 500 aa11.71□□□□□ -0.53
HDAC9-210ENST00000428307 MEIS2O14770 477 aa11.71□□□□□ -0.53
HDAC9-210ENST00000428307 PRCPP42785 496 aa11.71□□□□□ -0.53
HDAC9-210ENST00000428307 TMEM266Q2M3C6 531 aa11.71□□□□□ -0.53
HDAC9-210ENST00000428307 KMT5BQ4FZB7 885 aa11.71□□□□□ -0.53
HDAC9-210ENST00000428307 PPP4R3AQ6IN85 833 aa11.71□□□□□ -0.53
HDAC9-210ENST00000428307 VSTM4Q8IW00 320 aa11.71□□□□□ -0.53
HDAC9-210ENST00000428307 CALML4Q96GE6 196 aa11.71□□□□□ -0.53
HDAC9-210ENST00000428307 C16orf45Q96MC5 204 aaPredicted RBP11.71□□□□□ -0.53
HDAC9-210ENST00000428307 NUDT12Q9BQG2 462 aa11.71□□□□□ -0.53
HDAC9-210ENST00000428307 ARHGEF10LQ9HCE6 1279 aa11.71□□□□□ -0.53
HDAC9-210ENST00000428307 ORC2Q13416 577 aaPredicted RBP11.71□□□□□ -0.54
HDAC9-210ENST00000428307 CT47A1Q5JQC4 288 aaPredicted RBP11.71□□□□□ -0.54
HDAC9-210ENST00000428307 FAM83BQ5T0W9 1011 aa11.71□□□□□ -0.54
HDAC9-210ENST00000428307 HAS1Q92839 578 aa11.71□□□□□ -0.54
HDAC9-210ENST00000428307 P2RX7Q99572 595 aaKnown RBP11.71□□□□□ -0.54
HDAC9-210ENST00000428307 GLIS2Q9BZE0 524 aaPredicted RBP11.71□□□□□ -0.54
HDAC9-210ENST00000428307 TRMT1Q9NXH9 659 aaKnown RBP11.71□□□□□ -0.54
HDAC9-210ENST00000428307 PRR12Q9ULL5 1215 aa11.71□□□□□ -0.54
HDAC9-210ENST00000428307 TMX2Q9Y320 296 aa11.71□□□□□ -0.54
HDAC9-210ENST00000428307 ZNF646O15015 1829 aaPredicted RBP11.71□□□□□ -0.54
HDAC9-210ENST00000428307 USP27XA6NNY8 438 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 HOXA13P31271 388 aaPredicted RBP11.7□□□□□ -0.54
HDAC9-210ENST00000428307 FXR2P51116 673 aaKnown RBP eCLIP11.7□□□□□ -0.54
HDAC9-210ENST00000428307 RASA3Q14644 834 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 MTMR14Q8NCE2 650 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 NELFBQ8WX92 580 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 ANO3Q9BYT9 981 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 TRIM9Q9C026 710 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 PCDHA12Q9UN75 941 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 GREB1LQ9C091 1923 aaPredicted RBP11.7□□□□□ -0.54
HDAC9-210ENST00000428307 TEX33O43247 280 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 KLRC4O43908 158 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 STAT2P52630 851 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 PAK1Q13153 545 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 GRB10Q13322 594 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 FKBP1CQ5VVH2 108 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 FAM83AQ86UY5 434 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 CCDC150Q8NCX0 1101 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 KIFC2Q96AC6 838 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 CDK5RAP3Q96JB5 506 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 RAB34Q9BZG1 259 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 GJA3Q9Y6H8 435 aa11.7□□□□□ -0.54
HDAC9-210ENST00000428307 MYH4Q9Y623 1939 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 CAP2P40123 477 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 ASIC1P78348 528 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 PDIA5Q14554 519 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 TNIP1Q15025 636 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 KRT79Q5XKE5 535 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 SAMD7Q7Z3H4 446 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 SNX29Q8TEQ0 813 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 EEF2KMTQ96G04 330 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 GLT8D2Q9H1C3 349 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 CUEDC2Q9H467 287 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 GOPCQ9HD26 462 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 RWDD2AQ9UIY3 292 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 COL2A1P02458 1487 aaPredicted RBP11.69□□□□□ -0.54
HDAC9-210ENST00000428307 TRIM49BA6NDI0 452 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 PMS1P54277 932 aaKnown RBP11.69□□□□□ -0.54
HDAC9-210ENST00000428307 RASSF7Q02833 373 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 PDE4DQ08499 809 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 MCM6Q14566 821 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 NR1I3Q14994 352 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 CDKAL1Q5VV42 579 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 CCDC174Q6PII3 467 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 BTNL9Q6UXG8 535 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 HPS3Q969F9 1004 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 ZBED3Q96IU2 234 aaPredicted RBP11.69□□□□□ -0.54
HDAC9-210ENST00000428307 PNMA5Q96PV4 448 aa11.69□□□□□ -0.54
HDAC9-210ENST00000428307 ASTN2O75129 1339 aaPredicted RBP11.69□□□□□ -0.54
HDAC9-210ENST00000428307 PSDA5PKW4 1024 aaPredicted RBP11.68□□□□□ -0.54
HDAC9-210ENST00000428307 SPDYE3A6NKU9 549 aa11.68□□□□□ -0.54
HDAC9-210ENST00000428307 TBC1D12O60347 775 aa11.68□□□□□ -0.54
HDAC9-210ENST00000428307 RHOBTB3O94955 611 aa11.68□□□□□ -0.54
HDAC9-210ENST00000428307 MYL1P05976 194 aa11.68□□□□□ -0.54
HDAC9-210ENST00000428307 CCT6AP40227 531 aaKnown RBP11.68□□□□□ -0.54
HDAC9-210ENST00000428307 ARHGAP4P98171 946 aa11.68□□□□□ -0.54
HDAC9-210ENST00000428307 ECM1Q16610 540 aa11.68□□□□□ -0.54
HDAC9-210ENST00000428307 TBC1D10BQ4KMP7 808 aaPredicted RBP11.68□□□□□ -0.54
HDAC9-210ENST00000428307 PRR16Q569H4 304 aa11.68□□□□□ -0.54
HDAC9-210ENST00000428307 SPECC1LQ69YQ0 1117 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms