RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 A0A1W2PQY0 241 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 CDC45O75419 566 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 NR0B2Q15466 257 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 NTRK3Q16288 839 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 INF2Q27J81 1249 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 IQCEQ6IPM2 695 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 CBLL1Q75N03 491 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 FLAD1Q8NFF5 587 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 SP110Q9HB58 689 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 IMPACTQ9P2X3 320 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 ADGRE2Q9UHX3 823 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 GPR160Q9UJ42 338 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 CCDC163A0A0D9SF12 145 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 C7orf72A4D263 438 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 WTIPA6NIX2 430 aaPredicted RBP6.1□□□□□ -1.43
USP40-204ENST00000427947 NOTOA8MTQ0 251 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 ARNTLO00327 626 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 NRDCO43847 1150 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 PSPNO60542 156 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 ASMTLO95671 621 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 EFEMP2O95967 443 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 LTBRP36941 435 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 AFMP43652 599 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 KIR3DS1Q14943 382 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 SDE2Q6IQ49 451 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 GALNT18Q6P9A2 607 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 LILRA2Q8N149 483 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 NUP43Q8NFH3 380 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 ABHD4Q8TB40 342 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 DCAF4Q8WV16 495 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 PLCD4Q9BRC7 762 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 PHF20Q9BVI0 1012 aa6.1□□□□□ -1.43
USP40-204ENST00000427947 ENPP3O14638 875 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 C6orf222P0C671 652 aaPredicted RBP6.09□□□□□ -1.43
USP40-204ENST00000427947 LCP1P13796 627 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 PRKCAP17252 672 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 GALK1P51570 392 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 TESK1Q15569 626 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 FYB2Q5VWT5 728 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 STYK1Q6J9G0 422 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 KCNT2Q6UVM3 1135 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 ATG4DQ86TL0 474 aaPredicted RBP6.09□□□□□ -1.43
USP40-204ENST00000427947 SIRT2Q8IXJ6 389 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 KIRREL1Q96J84 757 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 NCOA5Q9HCD5 579 aaKnown RBP6.09□□□□□ -1.43
USP40-204ENST00000427947 BTG4Q9NY30 223 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 GULP1Q9UBP9 304 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 TRAF6Q9Y4K3 522 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 NPFFR2Q9Y5X5 522 aa6.09□□□□□ -1.43
USP40-204ENST00000427947 BIN1O00499 593 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 PPP1R12AO14974 1030 aaPredicted RBP6.08□□□□□ -1.44
USP40-204ENST00000427947 MYO1BO43795 1136 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 NPHS1O60500 1241 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 GABREP78334 506 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 CBX2Q14781 532 aaPredicted RBP6.08□□□□□ -1.44
USP40-204ENST00000427947 RCBTB1Q8NDN9 531 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 PTPRN2Q92932 1015 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 RNF32Q9H0A6 362 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 GPR27Q9NS67 375 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 NDOR1Q9UHB4 597 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 SFMBT1Q9UHJ3 866 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 RWDD3Q9Y3V2 267 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 PCDHA2Q9Y5H9 948 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 ASXL2Q76L83 1435 aa6.08□□□□□ -1.44
USP40-204ENST00000427947 RAPGEF3O95398 923 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 MSL3P1P0C860 447 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 TACR1P25103 407 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 IRAK1P51617 712 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 CORO7P57737 925 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 RPL11P62913 178 aaKnown RBP6.07□□□□□ -1.44
USP40-204ENST00000427947 MVKQ03426 396 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 TCEA2Q15560 299 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 TKFCQ3LXA3 575 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 RSPO2Q6UXX9 243 aaPredicted RBP6.07□□□□□ -1.44
USP40-204ENST00000427947 C16orf86Q6ZW13 317 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 MAMDC2Q7Z304 686 aaPredicted RBP6.07□□□□□ -1.44
USP40-204ENST00000427947 NLRX1Q86UT6 975 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 ASIC4Q96FT7 647 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 CHAMP1Q96JM3 812 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 MRPL4Q9BYD3 311 aaKnown RBP6.07□□□□□ -1.44
USP40-204ENST00000427947 SLC52A2Q9HAB3 445 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 MARCH2Q9P0N8 246 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 FBXL7Q9UJT9 491 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 CD2APQ9Y5K6 639 aa6.07□□□□□ -1.44
USP40-204ENST00000427947 TIMM13Q9Y5L4 95 aaPredicted RBP6.07□□□□□ -1.44
USP40-204ENST00000427947 A0A1W2PQJ5 194 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 AQP7O14520 342 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 PLD2O14939 933 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 MSCO60682 206 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 PAPLNO95428 1278 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 ARL4AP40617 200 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 BCL6P41182 706 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 GTF2A2P52657 109 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 CYP4F8P98187 520 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 SNX17Q15036 470 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 KCNMB1Q16558 191 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 MTDHQ86UE4 582 aaKnown RBP6.06□□□□□ -1.44
USP40-204ENST00000427947 ZSWIM9Q86XI8 627 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 TEX2Q8IWB9 1127 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 IFNL3Q8IZI9 196 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms