RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 TTLL7Q6ZT98 887 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ERICH1Q86X53 443 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 DEPTORQ8TB45 409 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 RABGAP1Q9Y3P9 1069 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 RTEL1-TNFRSF6BF6WH68 1400 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 UBXN1Q04323 297 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 CYLC2Q14093 348 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ACAP1Q15027 740 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 CCDC174Q6PII3 467 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 TRMT2AQ8IZ69 625 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 CCPG1Q9ULG6 757 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 SNX14Q9Y5W7 946 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ABCC1P33527 1531 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ARPC4P59998 168 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ZNF554Q86TJ5 538 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 TBCAO75347 108 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 AARSP49588 968 aaKnown RBP eCLIP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 NCOA5Q9HCD5 579 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 PPP1R9AQ9ULJ8 1098 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 LEMD3Q9Y2U8 911 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 LINC00854A0A1B0GVQ3 168 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 CFAP73A6NFT4 308 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 MMEP08473 750 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 HALP42357 657 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 CD151P48509 253 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 MAGOHP61326 146 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 DDR1Q08345 913 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 TMTC1Q8IUR5 882 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 MAGOHBQ96A72 148 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 LENG1Q96BZ8 264 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 EVI5LQ96CN4 794 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 MRRFQ96E11 262 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 EIF2AQ9BY44 585 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 OLFML3Q9NRN5 406 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 SEC63Q9UGP8 760 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ATP1A4Q13733 1029 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 TAB2Q9NYJ8 693 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 SPTLC1O15269 473 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ZBTB17Q13105 803 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 KIF22Q14807 665 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 CCDC68Q9H2F9 335 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 SUN2Q9UH99 717 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 XPOTO43592 962 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 HOXD12P35452 270 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 CNGB3Q9NQW8 809 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 A8MUI8 341 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 POTEJP0CG39 1038 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 HNRNPLLQ8WVV9 542 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 CTNND1O60716 968 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 IDEP14735 1019 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 AFMP43652 599 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 TTF2Q9UNY4 1162 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 NOS1P29475 1434 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ACTN4O43707 911 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 WASHC4Q2M389 1173 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 CDCA2Q69YH5 1023 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ZNF449Q6P9G9 518 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 OR2W6PQ8NHA6 318 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 LPIN2Q92539 896 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 HMG20BQ9P0W2 317 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 PRDM15P57071 1507 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ARHGEF5Q12774 1597 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 IQCA1LA6NCM1 817 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 TUBP50607 506 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 KRT12Q99456 494 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 MMTAG2Q9BU76 263 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 NFE2L2Q16236 605 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ZFYVE27Q5T4F4 411 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 PRAM1Q96QH2 718 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 CABP2Q9NPB3 220 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 RASSF9O75901 435 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 ZNF827Q17R98 1081 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CLIP3Q96DZ5 547 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 PRM3Q9NNZ6 103 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 DMAP1Q9NPF5 467 aaPredicted RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 TCP11X1B4DZS4 312 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 PRKG1Q13976 671 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CYTH1Q15438 398 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 RIC3Q7Z5B4 369 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 ZNF148Q9UQR1 794 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 GALNT15Q8N3T1 639 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 DPF2Q92785 391 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 TRAF3IP3Q9Y228 551 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 SUGT1Q9Y2Z0 365 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 BNIP1Q12981 228 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.72□□□□□ -1.812e-6■■■■■ 47.6
SYNE1-212ENST00000423061 GOLPH3LQ9H4A5 285 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 C6orf203Q9P0P8 240 aaPredicted RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 TDRKHQ9Y2W6 561 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CAPN1P07384 714 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 SLF2Q8IX21 1173 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 BHMTQ93088 406 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CYLDQ9NQC7 956 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 BOLA2-SMG1P6H3BVE0 249 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 HSPA1AP0DMV8 641 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 HSPA1BP0DMV9 641 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 ANKRD20A2Q5SQ80 823 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 ANKRD20A1Q5TYW2 823 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 ANKRD20A3Q5VUR7 823 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 VPS37DQ86XT2 251 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms