RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 CCDC144CPQ8IYA2 1237 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 C1orf131Q8NDD1 294 aaKnown RBP6.23□□□□□ -1.41
VPS13A-207ENST00000419472 BAHD1Q8TBE0 780 aaPredicted RBP6.23□□□□□ -1.41
VPS13A-207ENST00000419472 CHTF18Q8WVB6 975 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 NRSN2Q9GZP1 204 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 GIT1Q9Y2X7 761 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 ABHD14A-ACY1A0A1B0GW23 586 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 WDR64B1ANS9 1081 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 K7ESF4 209 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 XPOTO43592 962 aaKnown RBP6.23□□□□□ -1.41
VPS13A-207ENST00000419472 PTPRAP18433 802 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 GEMIN4P57678 1058 aaKnown RBP6.23□□□□□ -1.41
VPS13A-207ENST00000419472 LLGL1Q15334 1064 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 SCARA3Q6AZY7 606 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 LVRNQ6Q4G3 990 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 FAM35AQ86V20 835 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 SLFN12Q8IYM2 578 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 CLASRPQ8N2M8 674 aaKnown RBP6.23□□□□□ -1.41
VPS13A-207ENST00000419472 IGSF22Q8N9C0 903 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 TNIP3Q96KP6 325 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 DHRS1Q96LJ7 313 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 AKT3Q9Y243 479 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 FYCO1Q9BQS8 1478 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 AP1G1O43747 822 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 GTF2A2P52657 109 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 KCTD2Q14681 263 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 NKG7Q16617 165 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 GLIPR1L2Q4G1C9 344 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 PPM1JQ5JR12 505 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 DENND5AQ6IQ26 1287 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 GDF6Q6KF10 455 aaPredicted RBP6.23□□□□□ -1.41
VPS13A-207ENST00000419472 FIGNL1Q6PIW4 674 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 FAM186BQ8IYM0 893 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 TAAR9Q96RI9 348 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 EIF2AK1Q9BQI3 630 aaKnown RBP6.23□□□□□ -1.41
VPS13A-207ENST00000419472 UBE2OQ9C0C9 1292 aaKnown RBP6.23□□□□□ -1.41
VPS13A-207ENST00000419472 SMG9Q9H0W8 520 aaKnown RBP6.23□□□□□ -1.41
VPS13A-207ENST00000419472 H3BRJ5 948 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 TRAF5O00463 557 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 TPP1O14773 563 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 U2AF1L5P0DN76 240 aaPredicted RBP6.22□□□□□ -1.41
VPS13A-207ENST00000419472 NAT2P11245 290 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 MAOBP27338 520 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 KCNJ6P48051 423 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 FXR1P51114 621 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS13A-207ENST00000419472 ALDH5A1P51649 535 aaPredicted RBP6.22□□□□□ -1.41
VPS13A-207ENST00000419472 GFRA1P56159 465 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 U2AF1Q01081 240 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS13A-207ENST00000419472 TMEM240Q5SV17 173 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 USP53Q70EK8 1073 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 ZNF354CQ86Y25 554 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 TRIM59Q8IWR1 403 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 SLC35G2Q8TBE7 412 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 TTC17Q96AE7 1141 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 C1orf159Q96HA4 380 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 TRERF1Q96PN7 1200 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 APOL5Q9BWW9 433 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 ADAM19Q9H013 955 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 MS4A5Q9H3V2 200 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 RSAD1Q9HA92 442 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 DNMT3LQ9UJW3 386 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 PCDHGB6Q9Y5F9 930 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 CD109Q6YHK3 1445 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 CASKIN1Q8WXD9 1431 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 A0A087WZG4 1122 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 CBX4O00257 560 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 RGS13O14921 159 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 ERC2O15083 957 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 SETSIPP0DME0 302 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 PTMSP20962 102 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 CYP4F3Q08477 520 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 MRPL14Q6P1L8 145 aaKnown RBP6.22□□□□□ -1.41
VPS13A-207ENST00000419472 CATIPQ7Z7H3 387 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 MCATQ8IVS2 390 aaKnown RBP6.22□□□□□ -1.41
VPS13A-207ENST00000419472 CYP4X1Q8N118 509 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 NDFIP2Q9NV92 336 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 MKS1Q9NXB0 559 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 TOR4AQ9NXH8 423 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 HIF3AQ9Y2N7 669 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 EMC9Q9Y3B6 208 aa6.22□□□□□ -1.41
VPS13A-207ENST00000419472 NOP56O00567 594 aaKnown RBP6.21□□□□□ -1.42
VPS13A-207ENST00000419472 CLEC3AO75596 197 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 RHCEP18577 417 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 CD247P20963 164 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 SCAND1P57086 179 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 GJA9P57773 515 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 RHDQ02161 417 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 ZNF598Q86UK7 904 aaKnown RBP6.21□□□□□ -1.42
VPS13A-207ENST00000419472 FCHSD1Q86WN1 690 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 ATXN2LQ8WWM7 1075 aaKnown RBP6.21□□□□□ -1.42
VPS13A-207ENST00000419472 AIFM3Q96NN9 605 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 CORO1BQ9BR76 489 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 SELENOOQ9BVL4 669 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 KIF14Q15058 1648 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 MYO5CQ9NQX4 1742 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 SOS2Q07890 1332 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-207ENST00000419472 RNASEH2AO75792 299 aaKnown RBP6.21□□□□□ -1.42
VPS13A-207ENST00000419472 GUCY1A3Q02108 690 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 PDE3AQ14432 1141 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 IFIT1BQ5T764 474 aaKnown RBP6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms