RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 PIH1D3Q9NQM4 214 aaKnown RBP8.43□□□□□ -1.06
HMGN1-205ENST00000419378 LRP2BPQ9P2M1 347 aa8.43□□□□□ -1.06
HMGN1-205ENST00000419378 ATXN7L1Q9ULK2 861 aaPredicted RBP8.43□□□□□ -1.06
HMGN1-205ENST00000419378 DOCK2Q92608 1830 aa8.43□□□□□ -1.06
HMGN1-205ENST00000419378 GPR75-ASB3A0A0A6YYF3 556 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 RAB11FIP3O75154 756 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 PHACTR2O75167 634 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 ENTPD3O75355 529 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 ZBTB48P10074 688 aaPredicted RBP8.42□□□□□ -1.06
HMGN1-205ENST00000419378 FGFR3P22607 806 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 TARSP26639 723 aaKnown RBP8.42□□□□□ -1.06
HMGN1-205ENST00000419378 RHBDL3P58872 404 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 GSTO1P78417 241 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 ATP2B2Q01814 1243 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 SPEM2Q0P670 501 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 VGLL4Q14135 290 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 FOXR1Q6PIV2 292 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.42□□□□□ -1.06
HMGN1-205ENST00000419378 SV2AQ7L0J3 742 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 HOOK2Q96ED9 719 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 WNK4Q96J92 1243 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 SLC30A3Q99726 388 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 RNF186Q9NXI6 227 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 SAGE1Q9NXZ1 904 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 ABI2Q9NYB9 513 aaPredicted RBP8.42□□□□□ -1.06
HMGN1-205ENST00000419378 PHF24Q9UPV7 400 aa8.42□□□□□ -1.06
HMGN1-205ENST00000419378 MYO5AQ9Y4I1 1855 aaKnown RBP8.42□□□□□ -1.06
HMGN1-205ENST00000419378 ATRNL1Q5VV63 1379 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 IGSF3O75054 1194 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 CPNE3O75131 537 aaKnown RBP8.41□□□□□ -1.06
HMGN1-205ENST00000419378 PRPF40AO75400 957 aaKnown RBP8.41□□□□□ -1.06
HMGN1-205ENST00000419378 WDHD1O75717 1129 aaPredicted RBP8.41□□□□□ -1.06
HMGN1-205ENST00000419378 LDHCP07864 332 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 SREBF2Q12772 1141 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 DCAF15Q66K64 600 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 NAA16Q6N069 864 aaPredicted RBP8.41□□□□□ -1.06
HMGN1-205ENST00000419378 MIGA2Q7L4E1 593 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 ADGRA1Q86SQ6 560 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 ZFPM1Q8IX07 1006 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 C1orf127Q8N9H9 656 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 MRRFQ96E11 262 aaKnown RBP8.41□□□□□ -1.06
HMGN1-205ENST00000419378 TRERF1Q96PN7 1200 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 WRNIP1Q96S55 665 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 CFHR5Q9BXR6 569 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 ZNF341Q9BYN7 854 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 DDX4Q9NQI0 724 aaKnown RBP8.41□□□□□ -1.06
HMGN1-205ENST00000419378 CNTN3Q9P232 1028 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 ZFATQ9P243 1243 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 CSADQ9Y600 493 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 SNCAIPQ9Y6H5 919 aa8.41□□□□□ -1.06
HMGN1-205ENST00000419378 COL2A1P02458 1487 aaPredicted RBP8.4□□□□□ -1.06
HMGN1-205ENST00000419378 TRPA1O75762 1119 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 MAP4K4O95819 1239 aaPredicted RBP8.4□□□□□ -1.06
HMGN1-205ENST00000419378 IFIT2P09913 472 aaKnown RBP8.4□□□□□ -1.06
HMGN1-205ENST00000419378 NFKB1P19838 968 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 TM4SF4P48230 202 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 CTBSQ01459 385 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 PICALMQ13492 652 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 TTC39BQ5VTQ0 682 aaPredicted RBP8.4□□□□□ -1.06
HMGN1-205ENST00000419378 RAB44Q7Z6P3 723 aaPredicted RBP8.4□□□□□ -1.06
HMGN1-205ENST00000419378 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.4□□□□□ -1.06
HMGN1-205ENST00000419378 NANOS1Q8WY41 292 aaKnown RBP8.4□□□□□ -1.06
HMGN1-205ENST00000419378 OPTNQ96CV9 577 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 PNMA5Q96PV4 448 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 CRBNQ96SW2 442 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 DUSP9Q99956 384 aaKnown RBP8.4□□□□□ -1.06
HMGN1-205ENST00000419378 LRRCC1Q9C099 1032 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 BCL11AQ9H165 835 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 DNAJC25Q9H1X3 360 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 ANTXR1Q9H6X2 564 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 DCTPP1Q9H773 170 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 ZFYVE28Q9HCC9 887 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 RNF19AQ9NV58 838 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 AATFQ9NY61 560 aaKnown RBP eCLIP8.4□□□□□ -1.06
HMGN1-205ENST00000419378 KIAA1522Q9P206 1035 aaPredicted RBP8.4□□□□□ -1.06
HMGN1-205ENST00000419378 AK9Q5TCS8 1911 aa8.4□□□□□ -1.06
HMGN1-205ENST00000419378 FOCADQ5VW36 1801 aa8.39□□□□□ -1.07
HMGN1-205ENST00000419378 DDTLA6NHG4 134 aaPredicted RBP8.39□□□□□ -1.07
HMGN1-205ENST00000419378 MANSC4A6NHS7 340 aaPredicted RBP8.39□□□□□ -1.07
HMGN1-205ENST00000419378 MMP20O60882 483 aa8.39□□□□□ -1.07
HMGN1-205ENST00000419378 IDH1O75874 414 aaKnown RBP8.39□□□□□ -1.07
HMGN1-205ENST00000419378 BAG3O95817 575 aa8.39□□□□□ -1.07
HMGN1-205ENST00000419378 RARAP10276 462 aa8.39□□□□□ -1.07
HMGN1-205ENST00000419378 TEX11Q8IYF3 940 aa8.39□□□□□ -1.07
HMGN1-205ENST00000419378 SH3RF3Q8TEJ3 882 aaPredicted RBP8.39□□□□□ -1.07
HMGN1-205ENST00000419378 BHMTQ93088 406 aa8.39□□□□□ -1.07
HMGN1-205ENST00000419378 ZKSCAN4Q969J2 545 aaPredicted RBP8.39□□□□□ -1.07
HMGN1-205ENST00000419378 NOL10Q9BSC4 688 aaKnown RBP8.39□□□□□ -1.07
HMGN1-205ENST00000419378 CHRDQ9H2X0 955 aa8.39□□□□□ -1.07
HMGN1-205ENST00000419378 NXF1Q9UBU9 619 aaKnown RBP8.39□□□□□ -1.07
HMGN1-205ENST00000419378 PARP2Q9UGN5 583 aa8.39□□□□□ -1.07
HMGN1-205ENST00000419378 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.39□□□□□ -1.07
HMGN1-205ENST00000419378 HTTP42858 3142 aa8.39□□□□□ -1.07
HMGN1-205ENST00000419378 CASP8AP2Q9UKL3 1982 aa8.39□□□□□ -1.07
HMGN1-205ENST00000419378 CDK5RAP2Q96SN8 1893 aa8.38□□□□□ -1.07
HMGN1-205ENST00000419378 IGF2BP3O00425 579 aaKnown RBP eCLIP8.38□□□□□ -1.07
HMGN1-205ENST00000419378 GOLIM4O00461 696 aa8.38□□□□□ -1.07
HMGN1-205ENST00000419378 EREGO14944 169 aa8.38□□□□□ -1.07
HMGN1-205ENST00000419378 SMARCA5O60264 1052 aaPredicted RBP8.38□□□□□ -1.07
HMGN1-205ENST00000419378 POLR3DP05423 398 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms