RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 NPHP3-ACAD11A0A0J9YXS1 232 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 WTIPA6NIX2 430 aaPredicted RBP6.57□□□□□ -1.36
VPS54-204ENST00000416400 FGF10O15520 208 aaPredicted RBP6.57□□□□□ -1.36
VPS54-204ENST00000416400 TBX1O43435 398 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 USP2O75604 605 aaPredicted RBP6.57□□□□□ -1.36
VPS54-204ENST00000416400 CPP00450 1065 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 FGFR1P11362 822 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 JUNBP17275 347 aaPredicted RBP6.57□□□□□ -1.36
VPS54-204ENST00000416400 PAMP19021 973 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 ECI1P42126 302 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 RTP1P59025 263 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 YOD1Q5VVQ6 348 aaPredicted RBP6.57□□□□□ -1.36
VPS54-204ENST00000416400 GALNT18Q6P9A2 607 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 SCUBE1Q8IWY4 988 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 KISS1RQ969F8 398 aaPredicted RBP6.57□□□□□ -1.36
VPS54-204ENST00000416400 HHIPL1Q96JK4 782 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 NCOA5Q9HCD5 579 aaKnown RBP6.57□□□□□ -1.36
VPS54-204ENST00000416400 ERVK13-1Q9NX77 482 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 GPR160Q9UJ42 338 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 ZNF281Q9Y2X9 895 aa6.57□□□□□ -1.36
VPS54-204ENST00000416400 A0A1W2PQ45 241 aaPredicted RBP6.56□□□□□ -1.36
VPS54-204ENST00000416400 A0A1W2PQJ5 194 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 A0A1W2PQY0 241 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 PLD2O14939 933 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 PRODHO43272 600 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 HPXP02790 462 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 MASP1P48740 699 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 SUMO1P63165 101 aaKnown RBP6.56□□□□□ -1.36
VPS54-204ENST00000416400 PABPC4Q13310 644 aaKnown RBP eCLIP6.56□□□□□ -1.36
VPS54-204ENST00000416400 LAPTM5Q13571 262 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 NR0B2Q15466 257 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 KCNMB1Q16558 191 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 C21orf62-AS1Q17RA5 79 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 IQCEQ6IPM2 695 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 NSMFQ6X4W1 530 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 CBLL1Q75N03 491 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 NIM1KQ8IY84 436 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 KCTD13Q8WZ19 329 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 NINJ1Q92982 152 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 MFSD3Q96ES6 412 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 IER2Q9BTL4 223 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 KRTAP9-9Q9BYP9 154 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 KRTAP9-4Q9BYQ2 154 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 PCDH12Q9NPG4 1184 aa6.56□□□□□ -1.36
VPS54-204ENST00000416400 RFPL3O75679 317 aa6.55□□□□□ -1.36
VPS54-204ENST00000416400 PABPC1P11940 636 aaKnown RBP6.55□□□□□ -1.36
VPS54-204ENST00000416400 GRIA2P42262 883 aa6.55□□□□□ -1.36
VPS54-204ENST00000416400 ERVFC1P60507 584 aa6.55□□□□□ -1.36
VPS54-204ENST00000416400 CBX2Q14781 532 aaPredicted RBP6.55□□□□□ -1.36
VPS54-204ENST00000416400 SNX17Q15036 470 aa6.55□□□□□ -1.36
VPS54-204ENST00000416400 FNDC3BQ53EP0 1204 aaKnown RBP6.55□□□□□ -1.36
VPS54-204ENST00000416400 MCMBPQ9BTE3 642 aa6.55□□□□□ -1.36
VPS54-204ENST00000416400 G6PC3Q9BUM1 346 aa6.55□□□□□ -1.36
VPS54-204ENST00000416400 MRPL4Q9BYD3 311 aaKnown RBP6.55□□□□□ -1.36
VPS54-204ENST00000416400 C19orf44Q9H6X5 657 aa6.55□□□□□ -1.36
VPS54-204ENST00000416400 C19orf73Q9NVV2 129 aa6.55□□□□□ -1.36
VPS54-204ENST00000416400 FADS2P1A8MWK0 482 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 IRS4O14654 1257 aaPredicted RBP6.54□□□□□ -1.36
VPS54-204ENST00000416400 MEFVO15553 781 aaPredicted RBP6.54□□□□□ -1.36
VPS54-204ENST00000416400 NRDCO43847 1150 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 CAPNS1P04632 268 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 THBDP07204 575 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 PLS3P13797 630 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 TAL1P17542 331 aaPredicted RBP6.54□□□□□ -1.36
VPS54-204ENST00000416400 TRHRP34981 398 aaPredicted RBP6.54□□□□□ -1.36
VPS54-204ENST00000416400 ARL4AP40617 200 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 TM4SF20Q53R12 229 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 ZSWIM9Q86XI8 627 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 DHX37Q8IY37 1157 aaKnown RBP6.54□□□□□ -1.36
VPS54-204ENST00000416400 OSBP2Q969R2 916 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 ASIC4Q96FT7 647 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 GPRC5CQ9NQ84 441 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 CLEC1BQ9P126 229 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 SFMBT1Q9UHJ3 866 aa6.54□□□□□ -1.36
VPS54-204ENST00000416400 NPHS1O60500 1241 aa6.53□□□□□ -1.36
VPS54-204ENST00000416400 RAPGEF3O95398 923 aa6.53□□□□□ -1.36
VPS54-204ENST00000416400 APPP05067 770 aa6.53□□□□□ -1.36
VPS54-204ENST00000416400 VIL1P09327 827 aaKnown RBP6.53□□□□□ -1.36
VPS54-204ENST00000416400 HSF5Q4G112 596 aaPredicted RBP6.53□□□□□ -1.36
VPS54-204ENST00000416400 MPZL3Q6UWV2 235 aa6.53□□□□□ -1.36
VPS54-204ENST00000416400 NUP43Q8NFH3 380 aa6.53□□□□□ -1.36
VPS54-204ENST00000416400 FAM168AQ92567 244 aa6.53□□□□□ -1.36
VPS54-204ENST00000416400 COPS5Q92905 334 aa6.53□□□□□ -1.36
VPS54-204ENST00000416400 EBF1Q9UH73 591 aa6.53□□□□□ -1.36
VPS54-204ENST00000416400 KRTAP4-8A0A0G2JLE6 195 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 MYO1BO43795 1136 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 PSPNO60542 156 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 SCG5P05408 212 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 GLI1P08151 1106 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 CNGA1P29973 690 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 GFRA1P56159 465 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 MAP4K2Q12851 820 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 E4F1Q66K89 784 aaPredicted RBP6.52□□□□□ -1.37
VPS54-204ENST00000416400 KRT26Q7Z3Y9 468 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 SLCO6A1Q86UG4 719 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 CPNE8Q86YQ8 564 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 PPIL6Q8IXY8 311 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 TMEM52Q8NDY8 209 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 USP33Q8TEY7 942 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 DIO2Q92813 273 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms