RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 NBPF10Q6P3W6 841 aaKnown RBP8.53□□□□□ -1.04
SYNE1-210ENST00000409694 MMS19Q96T76 1030 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 HAUS4Q9H6D7 363 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 RNF14Q9UBS8 474 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 ATP1A2P50993 1020 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 IFRD2Q12894 506 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-210ENST00000409694 NR1H3Q13133 447 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 ALS2CLQ60I27 953 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 TSHZ3Q63HK5 1081 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 MYOCDQ8IZQ8 938 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 NCLNQ969V3 563 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 GCNAQ96QF7 691 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 TMEM60Q9H2L4 133 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 CIITAP33076 1130 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 TXKP42681 527 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 MTX1Q13505 466 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 PPP6R3Q5H9R7 873 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-210ENST00000409694 TTBK2Q6IQ55 1244 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 ANO3Q9BYT9 981 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 GOLGA8MH3BSY2 632 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 YWHAHQ04917 246 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-210ENST00000409694 PABPC4Q13310 644 aaKnown RBP eCLIP8.53□□□□□ -1.04
SYNE1-210ENST00000409694 SLF1Q9BQI6 1058 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 NFE2L3Q9Y4A8 694 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 NR5A1Q13285 461 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 METTL13Q8N6R0 699 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 MIGA1Q8NAN2 632 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 RNF217Q8TC41 542 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 SNX19Q92543 992 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 PLXNC1O60486 1568 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 H7C0C1 242 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 KDM1AO60341 852 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 ATP5OP48047 213 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 N4BP2L2Q92802 583 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-210ENST00000409694 ANKRD36BP1Q96IX9 119 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 ZNF148Q9UQR1 794 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 KRT7P08729 469 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 MFAP3P55082 362 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 ZBTB41Q5SVQ8 909 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 ARHGEF16Q5VV41 709 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 PLEKHM3Q6ZWE6 761 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 CABP7Q86V35 215 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 CRLF3Q8IUI8 442 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 RABGGTAQ92696 567 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 MAP3K5Q99683 1374 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 CDC25BP30305 580 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 LIG3P49916 1009 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 METTL23Q86XA0 190 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 RFX6Q8HWS3 928 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 MRPS26Q9BYN8 205 aaKnown RBP8.53□□□□□ -1.04
SYNE1-210ENST00000409694 KDM4CQ9H3R0 1056 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 AKAP4Q5JQC9 854 aa8.52□□□□□ -1.04
SYNE1-210ENST00000409694 FAM102BQ5T8I3 360 aa8.52□□□□□ -1.04
SYNE1-210ENST00000409694 DCLK2Q8N568 766 aa8.52□□□□□ -1.04
SYNE1-210ENST00000409694 TAB2Q9NYJ8 693 aa8.52□□□□□ -1.04
SYNE1-210ENST00000409694 TRPC5Q9UL62 973 aaPredicted RBP8.52□□□□□ -1.04
SYNE1-210ENST00000409694 PCDH11XQ9BZA7 1347 aa8.52□□□□□ -1.04
SYNE1-210ENST00000409694 PCDH11YQ9BZA8 1340 aa8.52□□□□□ -1.04
SYNE1-210ENST00000409694 GOLGA8JA6NMD2 632 aa8.52□□□□□ -1.04
SYNE1-210ENST00000409694 LAD1O00515 517 aa8.52□□□□□ -1.04
SYNE1-210ENST00000409694 TMEM191BP0C7N4 346 aa8.52□□□□□ -1.04
SYNE1-210ENST00000409694 SLC9A1P19634 815 aa8.52□□□□□ -1.04
SYNE1-210ENST00000409694 MDM2Q00987 491 aaPredicted RBP8.52□□□□□ -1.04
SYNE1-210ENST00000409694 JPH2Q9BR39 696 aaPredicted RBP8.52□□□□□ -1.04
SYNE1-210ENST00000409694 ARMCX3Q9UH62 379 aaPredicted RBP8.52□□□□□ -1.04
SYNE1-210ENST00000409694 ABCC1P33527 1531 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 K7ENM7 598 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 E2F6O75461 281 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 TAF1BQ53T94 588 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-210ENST00000409694 ANGPTL8Q6UXH0 198 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 WDR17Q8IZU2 1322 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 KIF1CO43896 1103 aaKnown RBP8.52□□□□□ -1.05
SYNE1-210ENST00000409694 WBP4O75554 376 aaKnown RBP8.52□□□□□ -1.05
SYNE1-210ENST00000409694 AP2B1P63010 937 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 OCRLQ01968 901 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 RASSF7Q02833 373 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 PTK2Q05397 1052 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 CUL1Q13616 776 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 TNFAIP1Q13829 316 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 KIF19Q2TAC6 998 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 ARL13BQ3SXY8 428 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 TRIM67Q6ZTA4 783 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 ZCRB1Q8TBF4 217 aaKnown RBP8.52□□□□□ -1.05
SYNE1-210ENST00000409694 PSMB7Q99436 277 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 POLE2P56282 527 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 IFT88Q13099 833 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 CEP70Q8NHQ1 597 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 KLC2Q9H0B6 622 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 FAM207AQ9NSI2 230 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-210ENST00000409694 GINS2Q9Y248 185 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 ADGRL1O94910 1474 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 DRP2Q13474 957 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 KAZNQ674X7 775 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 AFAP1Q8N556 730 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 XAGE3Q8WTP9 111 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 ABHD8Q96I13 439 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 PBKQ96KB5 322 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 CUEDC2Q9H467 287 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 CBX8Q9HC52 389 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 NOP53Q9NZM5 478 aaKnown RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms