RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ADCY7P51828 1080 aa14.97□□□□□ -0.01
VPS54-203ENST00000409558 RHBDL3P58872 404 aa14.97□□□□□ -0.01
VPS54-203ENST00000409558 TBC1D10BQ4KMP7 808 aaPredicted RBP14.97□□□□□ -0.01
VPS54-203ENST00000409558 CCDC93Q567U6 631 aa14.97□□□□□ -0.01
VPS54-203ENST00000409558 PCP11498 1178 aaKnown RBP14.97□□□□□ -0.01
VPS54-203ENST00000409558 ATP2B4P23634 1241 aa14.97□□□□□ -0.01
VPS54-203ENST00000409558 BMS1Q14692 1282 aaKnown RBP14.97□□□□□ -0.01
VPS54-203ENST00000409558 COL14A1Q05707 1796 aaKnown RBP14.97□□□□□ -0.01
VPS54-203ENST00000409558 ZNF185O15231 689 aa14.97□□□□□ -0.01
VPS54-203ENST00000409558 CHMP2AO43633 222 aa14.97□□□□□ -0.01
VPS54-203ENST00000409558 MYO1BO43795 1136 aa14.97□□□□□ -0.01
VPS54-203ENST00000409558 C2CD5Q86YS7 1000 aa14.97□□□□□ -0.01
VPS54-203ENST00000409558 ADGRF4Q8IZF3 695 aa14.97□□□□□ -0.01
VPS54-203ENST00000409558 ADSSL1Q8N142 457 aa14.97□□□□□ -0.01
VPS54-203ENST00000409558 SERPINB13Q9UIV8 391 aa14.97□□□□□ -0.01
VPS54-203ENST00000409558 E9PMD0 336 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 TRAPPC10P48553 1259 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 RC3H1Q5TC82 1133 aaKnown RBP14.96□□□□□ -0.01
VPS54-203ENST00000409558 SV2BQ7L1I2 683 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 CCDC84Q86UT8 332 aaPredicted RBP14.96□□□□□ -0.01
VPS54-203ENST00000409558 TRIM9Q9C026 710 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 TMC4Q7Z404 712 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 MB21D1Q8N884 522 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 NEK11Q8NG66 645 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 NEDD1Q8NHV4 660 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 GOLGA1Q92805 767 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 CCDC102AQ96A19 550 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 BMP2KQ9NSY1 1161 aaPredicted RBP14.96□□□□□ -0.01
VPS54-203ENST00000409558 ZNHIT6Q9NWK9 470 aaKnown RBP14.96□□□□□ -0.01
VPS54-203ENST00000409558 CYP26C1Q6V0L0 522 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 KRT25Q7Z3Z0 450 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 BCS1LQ9Y276 419 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 MRFAP1Q9Y605 127 aa14.96□□□□□ -0.01
VPS54-203ENST00000409558 MYH6P13533 1939 aa14.96□□□□□ -0.02
VPS54-203ENST00000409558 CLRN2A0PK11 232 aa14.96□□□□□ -0.02
VPS54-203ENST00000409558 MYMKA6NI61 221 aa14.96□□□□□ -0.02
VPS54-203ENST00000409558 MMP10P09238 476 aa14.96□□□□□ -0.02
VPS54-203ENST00000409558 CHRNA5P30532 468 aa14.96□□□□□ -0.02
VPS54-203ENST00000409558 SLC1A4P43007 532 aa14.96□□□□□ -0.02
VPS54-203ENST00000409558 NOA1Q8NC60 698 aaKnown RBP14.96□□□□□ -0.02
VPS54-203ENST00000409558 ARFGAP3Q9NP61 516 aa14.96□□□□□ -0.02
VPS54-203ENST00000409558 SFI1A8K8P3 1242 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 TRAF5O00463 557 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 SASH3O75995 380 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 HSPA1LP34931 641 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 KRT79Q5XKE5 535 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 C16orf86Q6ZW13 317 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 OR8K1Q8NGG5 319 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 RABEP2Q9H5N1 569 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 MTMR4Q9NYA4 1195 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 DUOX1Q9NRD9 1551 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 GPR75-ASB3A0A0A6YYF3 556 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 DMTNQ08495 405 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 PLS1Q14651 629 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 RRAGAQ7L523 313 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 KIFC2Q96AC6 838 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 KIAA1024Q9UPX6 916 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 COL16A1Q07092 1604 aaPredicted RBP14.95□□□□□ -0.02
VPS54-203ENST00000409558 NDUFA10O95299 355 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 TMEM266Q2M3C6 531 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 CCDC40Q4G0X9 1142 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 MAEAQ7L5Y9 396 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 PANX2Q96RD6 677 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 BCAS3Q9H6U6 928 aa14.95□□□□□ -0.02
VPS54-203ENST00000409558 BUB1O43683 1085 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 MAP3K9P80192 1104 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 SPAG1Q07617 926 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 PDE4CQ08493 712 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 ARL6IP4Q66PJ3 421 aaKnown RBP14.94□□□□□ -0.02
VPS54-203ENST00000409558 CACNA2D4Q7Z3S7 1137 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 P2RX5Q93086 422 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.94□□□□□ -0.02
VPS54-203ENST00000409558 LACRTQ9GZZ8 138 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 EHD2Q9NZN4 543 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 PPP1R1BQ9UD71 204 aaPredicted RBP14.94□□□□□ -0.02
VPS54-203ENST00000409558 EFCAB8A8MWE9 144 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 H7C1D1 291 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 EPHB6O15197 1021 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 AKR1B10O60218 316 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 SEPT2Q15019 361 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 PRR16Q569H4 304 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 PSTPIP2Q9H939 334 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 CACNA1SQ13698 1873 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 TCERG1LQ5VWI1 586 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 TMTC1Q8IUR5 882 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 DDX12PQ92771 950 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 NAPGQ99747 312 aaPredicted RBP14.94□□□□□ -0.02
VPS54-203ENST00000409558 TDRD3Q9H7E2 651 aaKnown RBP14.94□□□□□ -0.02
VPS54-203ENST00000409558 DDX25Q9UHL0 483 aaKnown RBP14.94□□□□□ -0.02
VPS54-203ENST00000409558 PCDHA1Q9Y5I3 950 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 FHOD1Q9Y613 1164 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 CHD4Q14839 1912 aa14.94□□□□□ -0.02
VPS54-203ENST00000409558 POTEB3A0JP26 581 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 POTECB2RU33 542 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 KLRC4O43908 158 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 POTEBQ6S5H4 581 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 PNKPQ96T60 521 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 FGFBP2Q9BYJ0 223 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 GOLGA6L9A6NEM1 432 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 APBA3O96018 575 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms