RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 FAM26FQ5R3K3 315 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 FAM102BQ5T8I3 360 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 METTL13Q8N6R0 699 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 PAF1Q8N7H5 531 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 AKT1S1Q96B36 256 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 LARSQ9P2J5 1176 aaKnown RBP10.12□□□□□ -0.79
LIG4-202ENST00000405925 SALL1Q9NSC2 1324 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 CYLC1P35663 651 aaPredicted RBP10.12□□□□□ -0.79
LIG4-202ENST00000405925 TROAPQ12815 778 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 AP3B2Q13367 1082 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 RAPGEF1Q13905 1077 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 KIF22Q14807 665 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 FAM178BQ8IXR5 827 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 RDH13Q8NBN7 331 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 VCPKMTQ9H867 229 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 SPC25Q9HBM1 224 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 PRM3Q9NNZ6 103 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 CCDC172P0C7W6 258 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 DNM2P50570 870 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 ARHGAP4P98171 946 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 FAM47CQ5HY64 1035 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 AMIGO3Q86WK7 504 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 PROM2Q8N271 834 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 SRRTQ9BXP5 876 aaKnown RBP10.12□□□□□ -0.79
LIG4-202ENST00000405925 KIF28PB7ZC32 967 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 RPN1P04843 607 aaKnown RBP10.12□□□□□ -0.79
LIG4-202ENST00000405925 PTPREP23469 700 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 MYOCDQ8IZQ8 938 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 IGSF22Q8N9C0 903 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 RUFY1Q96T51 708 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 ZHX1Q9UKY1 873 aaPredicted RBP10.12□□□□□ -0.79
LIG4-202ENST00000405925 EXOC7Q9UPT5 735 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 PCDHB13Q9Y5F0 798 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 ATRNO75882 1429 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 CALUO43852 315 aaPredicted RBP10.11□□□□□ -0.79
LIG4-202ENST00000405925 SLFN14P0C7P3 912 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 GNG11P61952 73 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 CACNB1Q02641 598 aaPredicted RBP10.11□□□□□ -0.79
LIG4-202ENST00000405925 LDHDQ86WU2 507 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 ZNF280CQ8ND82 737 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 CDHR1Q96JP9 859 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 CAMKK2Q96RR4 588 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.11□□□□□ -0.79
LIG4-202ENST00000405925 SNW1Q13573 536 aaKnown RBP10.11□□□□□ -0.79
LIG4-202ENST00000405925 DEPTORQ8TB45 409 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 CCDC42Q96M95 316 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 TRERF1Q96PN7 1200 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 PANK4Q9NVE7 773 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 COL4A3BPQ9Y5P4 624 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 AHDC1Q5TGY3 1603 aaPredicted RBP10.11□□□□□ -0.79
LIG4-202ENST00000405925 MACROD2A1Z1Q3 448 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 FAM205CA6NFA0 338 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 POTEMA6NI47 508 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 PLCG1P19174 1290 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 RDXP35241 583 aaKnown RBP10.11□□□□□ -0.79
LIG4-202ENST00000405925 STAT3P40763 770 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 ARL6IP4Q66PJ3 421 aaKnown RBP10.11□□□□□ -0.79
LIG4-202ENST00000405925 SMYD4Q8IYR2 804 aaPredicted RBP10.11□□□□□ -0.79
LIG4-202ENST00000405925 KCNB2Q92953 911 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 ATP6V0A1Q93050 837 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 PSMD1Q99460 953 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 HPS5Q9UPZ3 1129 aa10.11□□□□□ -0.79
LIG4-202ENST00000405925 TMCO5BA8MYB1 307 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 CCND2P30279 289 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 IGBP1P78318 339 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 LONRF3Q496Y0 759 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 GAS2L3Q86XJ1 694 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 GPIHBP1Q8IV16 184 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 TRIML1Q8N9V2 468 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 ACER1Q8TDN7 264 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 DDX4Q9NQI0 724 aaKnown RBP10.1□□□□□ -0.79
LIG4-202ENST00000405925 PRR12Q9ULL5 1215 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 CTDNEP1O95476 244 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 FDPSP14324 419 aaKnown RBP10.1□□□□□ -0.79
LIG4-202ENST00000405925 MCM6Q14566 821 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 DPCR1Q3MIW9 517 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 ODR4Q5SWX8 454 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 CERS5Q8N5B7 392 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 LPAR1Q92633 364 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 FBXO40Q9UH90 709 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 BAZ2BQ9UIF8 2168 aaKnown RBP10.1□□□□□ -0.79
LIG4-202ENST00000405925 K7ENM7 598 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 TDP2O95551 362 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 POLGP54098 1239 aaPredicted RBP10.1□□□□□ -0.79
LIG4-202ENST00000405925 MAP3K9P80192 1104 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 HSP90AA2PQ14568 343 aaPredicted RBP10.1□□□□□ -0.79
LIG4-202ENST00000405925 APOBEC3HQ6NTF7 200 aaKnown RBP10.1□□□□□ -0.79
LIG4-202ENST00000405925 PPP1R18Q6NYC8 613 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 DPH6Q7L8W6 267 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 ZKSCAN4Q969J2 545 aaPredicted RBP10.1□□□□□ -0.79
LIG4-202ENST00000405925 GSDMAQ96QA5 445 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 PDGFDQ9GZP0 370 aaPredicted RBP10.1□□□□□ -0.79
LIG4-202ENST00000405925 FBXO28Q9NVF7 368 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 SEPT9Q9UHD8 586 aaPredicted RBP10.1□□□□□ -0.79
LIG4-202ENST00000405925 ABCB11O95342 1321 aa10.1□□□□□ -0.79
LIG4-202ENST00000405925 WNT10BO00744 389 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 WDR46O15213 610 aaKnown RBP10.09□□□□□ -0.79
LIG4-202ENST00000405925 CASQ1P31415 396 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 CETN2P41208 172 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 ECE1P42892 770 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms