RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 IL31Q6EBC2 164 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 SASS6Q6UVJ0 657 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 IDI2Q9BXS1 227 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 TRIM6Q9C030 488 aaPredicted RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 KDM4CQ9H3R0 1056 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 RNF146Q9NTX7 359 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 CLIP2Q9UDT6 1046 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 RREB1Q92766 1687 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 EPB41L2O43491 1005 aaKnown RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 PTPN11Q06124 597 aaPredicted RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 CCDC117Q8IWD4 279 aaPredicted RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 THNSL1Q8IYQ7 743 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 TINF2Q9BSI4 451 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 IL23AQ9NPF7 189 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 TRPC6Q9Y210 931 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 MYCLP12524 364 aaPredicted RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 HS1BP3Q53T59 392 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 ICE2Q659A1 982 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 CCDC73Q6ZRK6 1079 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 FBXO33Q7Z6M2 555 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 DEFB128Q7Z7B8 93 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 MIGA1Q8NAN2 632 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 RNF217Q8TC41 542 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 TGS1Q96RS0 853 aaKnown RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 KIAA1683Q9H0B3 1180 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 LMAN2LQ9H0V9 348 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 TNS1Q9HBL0 1735 aaKnown RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 hCG_2014768A0A024R1R8 64 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 A0A0G2JLL6 359 aaPredicted RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 POTECB2RU33 542 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 DUSP11O75319 330 aaKnown RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 PCP11498 1178 aaKnown RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 ADORA2AP29274 412 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 ATXN3P54252 364 aaPredicted RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 NUCB2P80303 420 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 RABEP1Q15276 862 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 DIXDC1Q155Q3 683 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 C16orf87Q6PH81 154 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 PRRT2Q7Z6L0 340 aaPredicted RBP9.12□□□□□ -0.95
LIMS1-203ENST00000393310 CCDC65Q8IXS2 484 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 TRIM22Q8IYM9 498 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 GPR20Q99678 358 aa9.12□□□□□ -0.95
LIMS1-203ENST00000393310 DOT1LQ8TEK3 1739 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 PPM1AP35813 382 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 FMR1Q06787 632 aaKnown RBP eCLIP9.11□□□□□ -0.95
LIMS1-203ENST00000393310 PROSER3Q2NL68 480 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 PHOSPHO2Q8TCD6 241 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 ALG1Q9BT22 464 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 PRKRIP1Q9H875 184 aaPredicted RBP9.11□□□□□ -0.95
LIMS1-203ENST00000393310 NDUFB9Q9Y6M9 179 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 N4BP2Q86UW6 1770 aaPredicted RBP9.11□□□□□ -0.95
LIMS1-203ENST00000393310 SMAPO00193 183 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 CREB3O43889 395 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 MTFR1Q15390 333 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 RILPL2Q969X0 211 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 PCDHA11Q9Y5I1 949 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 TESPA1A2RU30 521 aaPredicted RBP9.11□□□□□ -0.95
LIMS1-203ENST00000393310 GOLGA6L4A6NEF3 574 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 BAIAP3O94812 1187 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 TTLL1O95922 423 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 COL9A1P20849 921 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 CTNNB1P35222 781 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 GABPB1Q06547 395 aaPredicted RBP9.11□□□□□ -0.95
LIMS1-203ENST00000393310 BTG3Q14201 252 aaPredicted RBP9.11□□□□□ -0.95
LIMS1-203ENST00000393310 DGKDQ16760 1214 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 CCDC92Q53HC0 331 aaPredicted RBP9.11□□□□□ -0.95
LIMS1-203ENST00000393310 OLFML2BQ68BL8 750 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.11□□□□□ -0.95
LIMS1-203ENST00000393310 ZSCAN30Q86W11 494 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 NSUN6Q8TEA1 469 aaKnown RBP9.11□□□□□ -0.95
LIMS1-203ENST00000393310 ARHGAP45Q92619 1136 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 PHKBQ93100 1093 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 OSBP2Q969R2 916 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 FPGT-TNNI3KV9GXZ4 949 aa9.11□□□□□ -0.95
LIMS1-203ENST00000393310 A0A1B0GUA9 196 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 C1orf228Q6PIY5 440 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 APBB2Q92870 758 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 TMEM169Q96HH4 297 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 FAM107BQ9H098 131 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 VCPKMTQ9H867 229 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 TMEM232C9JQI7 657 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 CCND2P30279 289 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 TPM4P67936 248 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 LAMC2Q13753 1193 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 MICALCLQ6ZW33 695 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 FAM184AQ8NB25 1140 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 WHAMMQ8TF30 809 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 MYLIPQ8WY64 445 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 TSPAN18Q96SJ8 248 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 C6orf50Q9HD87 102 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 NRBP2Q9NSY0 501 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 MORF4L1Q9UBU8 362 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 PCDHA1Q9Y5I3 950 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 ABHD14A-ACY1A0A1B0GW23 586 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 M0R2C6 588 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 PARP1P09874 1014 aaKnown RBP9.1□□□□□ -0.95
LIMS1-203ENST00000393310 PAX3P23760 479 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 PEX19P40855 299 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 LIN9Q5TKA1 542 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 MRFAP1L1Q96HT8 127 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms