RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 BTDP43251 543 aa19.73■□□□□ 0.75
SQSTM1-202ENST00000389805 C2orf54Q08AI8 447 aa19.73■□□□□ 0.75
SQSTM1-202ENST00000389805 CDKAL1Q5VV42 579 aa19.73■□□□□ 0.75
SQSTM1-202ENST00000389805 RRP36Q96EU6 259 aaKnown RBP19.73■□□□□ 0.75
SQSTM1-202ENST00000389805 RTFDC1Q9BY42 306 aaPredicted RBP19.73■□□□□ 0.75
SQSTM1-202ENST00000389805 EPN1Q9Y6I3 576 aaPredicted RBP19.73■□□□□ 0.75
SQSTM1-202ENST00000389805 KIAA1551Q9HCM1 1747 aa19.73■□□□□ 0.75
SQSTM1-202ENST00000389805 MYO1FO00160 1098 aa19.73■□□□□ 0.75
SQSTM1-202ENST00000389805 CCDC122Q5T0U0 273 aa19.73■□□□□ 0.75
SQSTM1-202ENST00000389805 CTAGE1Q96RT6 745 aa19.73■□□□□ 0.75
SQSTM1-202ENST00000389805 FAM107BQ9H098 131 aa19.73■□□□□ 0.75
SQSTM1-202ENST00000389805 COL24A1Q17RW2 1714 aa19.73■□□□□ 0.75
SQSTM1-202ENST00000389805 RASA1P20936 1047 aa19.72■□□□□ 0.75
SQSTM1-202ENST00000389805 SND1Q7KZF4 910 aaKnown RBP eCLIP19.72■□□□□ 0.751e-6■□□□□ 8.1
SQSTM1-202ENST00000389805 C4orf32Q8N8J7 132 aa19.72■□□□□ 0.75
SQSTM1-202ENST00000389805 TMEM60Q9H2L4 133 aa19.72■□□□□ 0.75
SQSTM1-202ENST00000389805 CCDC88AQ3V6T2 1871 aa19.72■□□□□ 0.75
SQSTM1-202ENST00000389805 SHOX2O60902 331 aaPredicted RBP19.72■□□□□ 0.75
SQSTM1-202ENST00000389805 NDUFA10O95299 355 aa19.72■□□□□ 0.75
SQSTM1-202ENST00000389805 INF2Q27J81 1249 aa19.72■□□□□ 0.75
SQSTM1-202ENST00000389805 JPH2Q9BR39 696 aaPredicted RBP19.72■□□□□ 0.75
SQSTM1-202ENST00000389805 DLEC1Q9Y238 1755 aa19.72■□□□□ 0.75
SQSTM1-202ENST00000389805 SHTN1A0MZ66 631 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 H0YHG0 523 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 PDE2AO00408 941 aaPredicted RBP19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 PPARDQ03181 441 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 PDXDC2PQ6P474 469 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 GSDMAQ96QA5 445 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 MYO1AQ9UBC5 1043 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 PCDHA4Q9UN74 947 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 GSCP56915 257 aaPredicted RBP19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 GRM4Q14833 912 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 EZH2Q15910 746 aaKnown RBP19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 CCNI2Q6ZMN8 369 aaPredicted RBP19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 JAKMIP2Q96AA8 810 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 CCDC51Q96ER9 411 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 MATR3P43243 847 aaKnown RBP eCLIP19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 PPP4CP60510 307 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 GJD4Q96KN9 370 aaPredicted RBP19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 VAT1LQ9HCJ6 419 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 PCDHA6Q9UN73 950 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 PCDHA8Q9Y5H6 950 aa19.71■□□□□ 0.75
SQSTM1-202ENST00000389805 MYCNP04198 464 aaPredicted RBP19.7■□□□□ 0.74
SQSTM1-202ENST00000389805 SERPINB2P05120 415 aa19.7■□□□□ 0.74
SQSTM1-202ENST00000389805 GYS1P13807 737 aa19.7■□□□□ 0.74
SQSTM1-202ENST00000389805 RRAGBQ5VZM2 374 aa19.7■□□□□ 0.74
SQSTM1-202ENST00000389805 USP17L2Q6R6M4 530 aa19.7■□□□□ 0.74
SQSTM1-202ENST00000389805 HDAC7Q8WUI4 952 aa19.7■□□□□ 0.74
SQSTM1-202ENST00000389805 POLLQ9UGP5 575 aa19.7■□□□□ 0.74
SQSTM1-202ENST00000389805 CDK8P49336 464 aa19.7■□□□□ 0.74
SQSTM1-202ENST00000389805 MMP14P50281 582 aa19.7■□□□□ 0.74
SQSTM1-202ENST00000389805 GSTO1P78417 241 aa19.7■□□□□ 0.74
SQSTM1-202ENST00000389805 PPFIA1Q13136 1202 aa19.7■□□□□ 0.74
SQSTM1-202ENST00000389805 TEX11Q8IYF3 940 aa19.7■□□□□ 0.74
SQSTM1-202ENST00000389805 CCDC194A0A1B0GVG4 234 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 CALML3P27482 149 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 TRAPPC10P48553 1259 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 UBXN1Q04323 297 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 PDCLQ13371 301 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 MFSD14BQ5SR56 506 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 AMOTL1Q8IY63 956 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 JADE2Q9NQC1 790 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 DUSP10Q9Y6W6 482 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 LAMB1P07942 1786 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 KLRF2D3W0D1 207 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 EIF3HO15372 352 aaKnown RBP eCLIP19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 CCDC172P0C7W6 258 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 ATP1A2P50993 1020 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 COPB1P53618 953 aaKnown RBP19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 ANKS1AQ92625 1134 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 FAM212AQ96EL1 285 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 EYA3Q99504 573 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 GDAQ9Y2T3 454 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 GRIN2DO15399 1336 aa19.69■□□□□ 0.74
SQSTM1-202ENST00000389805 M0R2N6 131 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 MCM3P25205 808 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 SLC7A5Q01650 507 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 GGA1Q9UJY5 639 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 ZEB2O60315 1214 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 LDHCP07864 332 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 KCTD16Q68DU8 428 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 KIAA1328Q86T90 577 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 ARL8AQ96BM9 186 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 TTC26A0AVF1 554 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 MACROD2A1Z1Q3 448 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 PALM3A6NDB9 673 aaPredicted RBP19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 STXBP3O00186 592 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 NDUFAB1O14561 156 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 HERVK_113P62684 666 aa19.68■□□□□ 0.74
SQSTM1-202ENST00000389805 F8W031 263 aaPredicted RBP19.67■□□□□ 0.74
SQSTM1-202ENST00000389805 C6orf229H3BNL8 230 aa19.67■□□□□ 0.74
SQSTM1-202ENST00000389805 PSMD14O00487 310 aa19.67■□□□□ 0.74
SQSTM1-202ENST00000389805 FECHP22830 423 aa19.67■□□□□ 0.74
SQSTM1-202ENST00000389805 SH2D3CQ8N5H7 860 aa19.67■□□□□ 0.74
SQSTM1-202ENST00000389805 PSMB7Q99436 277 aa19.67■□□□□ 0.74
SQSTM1-202ENST00000389805 LACRTQ9GZZ8 138 aa19.67■□□□□ 0.74
SQSTM1-202ENST00000389805 RIMBP2O15034 1052 aa19.67■□□□□ 0.74
SQSTM1-202ENST00000389805 SEPT12Q8IYM1 358 aa19.67■□□□□ 0.74
SQSTM1-202ENST00000389805 BANK1Q8NDB2 785 aa19.67■□□□□ 0.74
SQSTM1-202ENST00000389805 RASSF8Q8NHQ8 419 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms