RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 LOC102724428A0A0B4J2F2 783 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 A0A1W2PQC6 194 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 GOLGA8AA7E2F4 631 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 CARSP49589 748 aaKnown RBP16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 SIK1P57059 783 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 KIF5AQ12840 1032 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 IRF2BP1Q8IU81 584 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 LMBR1Q8WVP7 490 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 OSBPL9Q96SU4 736 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 NHEJ1Q9H9Q4 299 aaPredicted RBP16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 CNNM1Q9NRU3 951 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 SMARCAL1Q9NZC9 954 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 LEMD3Q9Y2U8 911 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 CIAO1O76071 339 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 FMNL1O95466 1100 aaPredicted RBP16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 CYP27A1Q02318 531 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 PAK1Q13153 545 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 QPCTQ16769 361 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 IFT20Q8IY31 132 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 CCDC170Q8IYT3 715 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 TRIM58Q8NG06 486 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 ZNF507Q8TCN5 953 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 SPDL1Q96EA4 605 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 GDF3Q9NR23 364 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 NFU1Q9UMS0 254 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 LGALS16A8MUM7 142 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 IPO7O95373 1038 aaKnown RBP16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 NR5A1Q13285 461 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 ITPK1Q13572 414 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 BYSLQ13895 437 aaKnown RBP16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 C8orf74Q6P047 294 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 SMCR8Q8TEV9 937 aaPredicted RBP16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 NELFBQ8WX92 580 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 SEC16BQ96JE7 1060 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 MYL10Q9BUA6 226 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 RIPOR2Q9Y4F9 1068 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 TRAPPC3O43617 180 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 DNAJC8O75937 253 aaPredicted RBP16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 ATP6V1G2O95670 118 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 GLI1P08151 1106 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 ELF3P78545 371 aaPredicted RBP16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 AP1ARQ63HQ0 302 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 WASF1Q92558 559 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 PUS7LQ9H0K6 701 aaKnown RBP16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 EBF2Q9HAK2 575 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 NOD2Q9HC29 1040 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 EHD2Q9NZN4 543 aa16.25■□□□□ 0.19
VPS9D1-201ENST00000389386 CSF1RP07333 972 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 ZFYP08048 801 aaPredicted RBP16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 PARP1P09874 1014 aaKnown RBP16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 TCP1P17987 556 aaKnown RBP16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 TRIM28Q13263 835 aaKnown RBP16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 NFRKBQ6P4R8 1299 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 IGDCC4Q8TDY8 1250 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 STAMQ92783 540 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 SYMPKQ92797 1274 aaKnown RBP16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 RBM12Q9NTZ6 932 aaKnown RBP16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 VPS54Q9P1Q0 977 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 CAPN6Q9Y6Q1 641 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 TACC1O75410 805 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 TBC1D10CQ8IV04 446 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 ARFGAP2Q8N6H7 521 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 NSMCE1Q8WV22 266 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 CUL5Q93034 780 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 TSGA10Q9BZW7 698 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 AGPAT5Q9NUQ2 364 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 ETAA1Q9NY74 926 aa16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 IQSEC3Q9UPP2 1182 aaPredicted RBP16.24■□□□□ 0.19
VPS9D1-201ENST00000389386 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 C5orf60A6NFR6 353 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 ZNF263O14978 683 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 CXCR5P32302 372 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 CTSWP56202 376 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 PAK2Q13177 524 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 STAMBPL1Q96FJ0 436 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 LRWD1Q9UFC0 647 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 HYOU1Q9Y4L1 999 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 SPEF2Q9C093 1822 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 IFNAR1P17181 557 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 HPDP32754 393 aaPredicted RBP16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 CCDC181Q5TID7 509 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 NFXL1Q6ZNB6 911 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 SGMS1Q86VZ5 419 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 CCT6BQ92526 530 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 P3H4Q92791 437 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 BORCS6Q96GS4 357 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 LY9Q9HBG7 655 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 TMBIM4Q9HC24 238 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 ZNHIT6Q9NWK9 470 aaKnown RBP16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 SLC12A6Q9UHW9 1150 aa16.23■□□□□ 0.19
VPS9D1-201ENST00000389386 XDHP47989 1333 aa16.22■□□□□ 0.19
VPS9D1-201ENST00000389386 H7C1D1 291 aa16.22■□□□□ 0.19
VPS9D1-201ENST00000389386 CCDC26Q8TAB7 109 aa16.22■□□□□ 0.19
VPS9D1-201ENST00000389386 OXER1Q8TDS5 423 aa16.22■□□□□ 0.19
VPS9D1-201ENST00000389386 MICAL1Q8TDZ2 1067 aa16.22■□□□□ 0.19
VPS9D1-201ENST00000389386 IFT81Q8WYA0 676 aa16.22■□□□□ 0.19
VPS9D1-201ENST00000389386 APPBP2Q92624 585 aa16.22■□□□□ 0.19
VPS9D1-201ENST00000389386 HVCN1Q96D96 273 aa16.22■□□□□ 0.19
VPS9D1-201ENST00000389386 TBC1D31Q96DN5 1066 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms