RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.48■□□□□ 0.07
VPS28-202ENST00000377348 LCTP09848 1927 aa15.48■□□□□ 0.07
VPS28-202ENST00000377348 MYH6P13533 1939 aa15.48■□□□□ 0.07
VPS28-202ENST00000377348 SYNGAP1Q96PV0 1343 aa15.47■□□□□ 0.07
VPS28-202ENST00000377348 CFBP00751 764 aa15.47■□□□□ 0.07
VPS28-202ENST00000377348 TFRCP02786 760 aaKnown RBP15.47■□□□□ 0.07
VPS28-202ENST00000377348 RGS19P49795 217 aa15.47■□□□□ 0.07
VPS28-202ENST00000377348 RCAN1P53805 252 aa15.47■□□□□ 0.07
VPS28-202ENST00000377348 LHX8Q68G74 356 aa15.47■□□□□ 0.07
VPS28-202ENST00000377348 MSL3Q8N5Y2 521 aaKnown RBP15.47■□□□□ 0.07
VPS28-202ENST00000377348 RGS22Q8NE09 1264 aa15.47■□□□□ 0.07
VPS28-202ENST00000377348 SYTL5Q8TDW5 730 aaPredicted RBP15.47■□□□□ 0.07
VPS28-202ENST00000377348 IL17RAQ96F46 866 aa15.47■□□□□ 0.07
VPS28-202ENST00000377348 CRISPLD2Q9H0B8 497 aa15.47■□□□□ 0.07
VPS28-202ENST00000377348 COL20A1Q9P218 1284 aa15.47■□□□□ 0.07
VPS28-202ENST00000377348 SEC63Q9UGP8 760 aaKnown RBP15.47■□□□□ 0.07
VPS28-202ENST00000377348 DDX20Q9UHI6 824 aaKnown RBP15.47■□□□□ 0.07
VPS28-202ENST00000377348 ZHX1Q9UKY1 873 aaPredicted RBP15.47■□□□□ 0.07
VPS28-202ENST00000377348 CNPY2Q9Y2B0 182 aa15.47■□□□□ 0.07
VPS28-202ENST00000377348 PPFIA3O75145 1194 aa15.46■□□□□ 0.07
VPS28-202ENST00000377348 ZNF865P0CJ78 1059 aaPredicted RBP15.46■□□□□ 0.07
VPS28-202ENST00000377348 PDIA3P30101 505 aaKnown RBP15.46■□□□□ 0.07
VPS28-202ENST00000377348 ALDH5A1P51649 535 aaPredicted RBP15.46■□□□□ 0.07
VPS28-202ENST00000377348 EVCP57679 992 aa15.46■□□□□ 0.07
VPS28-202ENST00000377348 CCT2P78371 535 aaKnown RBP15.46■□□□□ 0.07
VPS28-202ENST00000377348 MCF2L2Q86YR7 1114 aa15.46■□□□□ 0.07
VPS28-202ENST00000377348 LENG1Q96BZ8 264 aaPredicted RBP15.46■□□□□ 0.07
VPS28-202ENST00000377348 TAAR1Q96RJ0 339 aa15.46■□□□□ 0.07
VPS28-202ENST00000377348 NCOA5Q9HCD5 579 aaKnown RBP15.46■□□□□ 0.07
VPS28-202ENST00000377348 ASB14A6NK59 587 aa15.45■□□□□ 0.06
VPS28-202ENST00000377348 SEPT4O43236 478 aa15.45■□□□□ 0.06
VPS28-202ENST00000377348 HOXA13P31271 388 aaPredicted RBP15.45■□□□□ 0.06
VPS28-202ENST00000377348 STK3Q13188 491 aa15.45■□□□□ 0.06
VPS28-202ENST00000377348 ACVR2BQ13705 512 aa15.45■□□□□ 0.06
VPS28-202ENST00000377348 EEPD1Q7L9B9 569 aa15.45■□□□□ 0.06
VPS28-202ENST00000377348 GPKOWQ92917 476 aaPredicted RBP eCLIP15.45■□□□□ 0.06
VPS28-202ENST00000377348 KATNBL1Q9H079 304 aa15.45■□□□□ 0.06
VPS28-202ENST00000377348 ADD3Q9UEY8 706 aaKnown RBP15.45■□□□□ 0.06
VPS28-202ENST00000377348 V9GY48 417 aaPredicted RBP15.45■□□□□ 0.06
VPS28-202ENST00000377348 MCM3APO60318 1980 aa15.45■□□□□ 0.06
VPS28-202ENST00000377348 NID2Q14112 1375 aa15.45■□□□□ 0.06
VPS28-202ENST00000377348 HSD17B4P51659 736 aa15.44■□□□□ 0.06
VPS28-202ENST00000377348 AK2P54819 239 aa15.44■□□□□ 0.06
VPS28-202ENST00000377348 NOL8Q76FK4 1167 aaKnown RBP15.44■□□□□ 0.06
VPS28-202ENST00000377348 HEATR3Q7Z4Q2 680 aa15.44■□□□□ 0.06
VPS28-202ENST00000377348 DIS3LQ8TF46 1054 aaKnown RBP15.44■□□□□ 0.06
VPS28-202ENST00000377348 C22orf23Q9BZE7 217 aa15.44■□□□□ 0.06
VPS28-202ENST00000377348 ABHD16BQ9H3Z7 469 aa15.44■□□□□ 0.06
VPS28-202ENST00000377348 NRBP1Q9UHY1 535 aa15.44■□□□□ 0.06
VPS28-202ENST00000377348 OGDHLQ9ULD0 1010 aa15.44■□□□□ 0.06
VPS28-202ENST00000377348 TNRC18O15417 2968 aaPredicted RBP15.43■□□□□ 0.06
VPS28-202ENST00000377348 CCDC196A0A1B0GTZ2 297 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 ADCY6O43306 1168 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 FARP2O94887 1054 aaPredicted RBP15.43■□□□□ 0.06
VPS28-202ENST00000377348 MNX1P50219 401 aaPredicted RBP15.43■□□□□ 0.06
VPS28-202ENST00000377348 NEK4P51957 841 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 GHRHRQ02643 423 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 TRAF1Q13077 416 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 NTRK3Q16288 839 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 WWC2Q6AWC2 1192 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 FBXO16Q8IX29 292 aaPredicted RBP15.43■□□□□ 0.06
VPS28-202ENST00000377348 DNERQ8NFT8 737 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 MORC4Q8TE76 937 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 PHKBQ93100 1093 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 ZNF274Q96GC6 653 aaPredicted RBP15.43■□□□□ 0.06
VPS28-202ENST00000377348 RMDN3Q96TC7 470 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 PDGFCQ9NRA1 345 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 TPCN1Q9ULQ1 816 aa15.43■□□□□ 0.06
VPS28-202ENST00000377348 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.42■□□□□ 0.06
VPS28-202ENST00000377348 GCOM1H8Y6P7 765 aaPredicted RBP15.42■□□□□ 0.06
VPS28-202ENST00000377348 MSCO60682 206 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 POLR2MP0CAP2 368 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 AKR1A1P14550 325 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 EIF2AK2P19525 551 aaKnown RBP15.42■□□□□ 0.06
VPS28-202ENST00000377348 PTGS1P23219 599 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 EDNRBP24530 442 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 PPP2R5BQ15173 497 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 CCDC144BQ3MJ40 725 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 TYW1BQ6NUM6 668 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 USP17L6PQ6QN14 398 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 UBE2Q1Q7Z7E8 422 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 KIF2CQ99661 725 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 ALDH8A1Q9H2A2 487 aaPredicted RBP15.42■□□□□ 0.06
VPS28-202ENST00000377348 FAM184BQ9ULE4 1060 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 LRRC37A2A6NM11 1700 aa15.42■□□□□ 0.06
VPS28-202ENST00000377348 DTNBO60941 627 aa15.41■□□□□ 0.06
VPS28-202ENST00000377348 MYCNP04198 464 aaPredicted RBP15.41■□□□□ 0.06
VPS28-202ENST00000377348 RARBP10826 455 aa15.41■□□□□ 0.06
VPS28-202ENST00000377348 ADCYAP1R1P41586 468 aa15.41■□□□□ 0.06
VPS28-202ENST00000377348 MLLT1Q03111 559 aaPredicted RBP15.41■□□□□ 0.06
VPS28-202ENST00000377348 PDE4DQ08499 809 aa15.41■□□□□ 0.06
VPS28-202ENST00000377348 TMEM63BQ5T3F8 832 aa15.41■□□□□ 0.06
VPS28-202ENST00000377348 ARHGEF16Q5VV41 709 aa15.41■□□□□ 0.06
VPS28-202ENST00000377348 TAPT1Q6NXT6 567 aa15.41■□□□□ 0.06
VPS28-202ENST00000377348 FCHSD1Q86WN1 690 aa15.41■□□□□ 0.06
VPS28-202ENST00000377348 NSUN6Q8TEA1 469 aaKnown RBP15.41■□□□□ 0.06
VPS28-202ENST00000377348 PAWRQ96IZ0 340 aaKnown RBP15.41■□□□□ 0.06
VPS28-202ENST00000377348 MAF1Q9H063 256 aa15.41■□□□□ 0.06
VPS28-202ENST00000377348 PXMP2Q9NR77 195 aa15.41■□□□□ 0.06
VPS28-202ENST00000377348 FRMPD3Q5JV73 1810 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms