RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 HNRNPH3P31942 346 aaKnown RBP23.52■■□□□ 1.36
UPF3A-202ENST00000375299 GYG1P46976 350 aa23.52■■□□□ 1.36
UPF3A-202ENST00000375299 IRX3P78415 501 aaPredicted RBP23.52■■□□□ 1.36
UPF3A-202ENST00000375299 EVX2Q03828 476 aa23.52■■□□□ 1.36
UPF3A-202ENST00000375299 EMBQ6PCB8 327 aa23.52■■□□□ 1.36
UPF3A-202ENST00000375299 CERS3Q8IU89 383 aa23.52■■□□□ 1.36
UPF3A-202ENST00000375299 CUEDC2Q9H467 287 aa23.52■■□□□ 1.36
UPF3A-202ENST00000375299 MYH10P35580 1976 aa23.52■■□□□ 1.36
UPF3A-202ENST00000375299 MOCS3O95396 460 aa23.52■■□□□ 1.36
UPF3A-202ENST00000375299 PDE4DQ08499 809 aa23.52■■□□□ 1.36
UPF3A-202ENST00000375299 SF3B2Q13435 895 aaKnown RBP23.52■■□□□ 1.36
UPF3A-202ENST00000375299 DRC1Q96MC2 740 aa23.52■■□□□ 1.36
UPF3A-202ENST00000375299 PLAGL2Q9UPG8 496 aa23.52■■□□□ 1.36
UPF3A-202ENST00000375299 LAMB2P55268 1798 aa23.52■■□□□ 1.36
UPF3A-202ENST00000375299 M0R2N6 131 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 CAMTA2O94983 1202 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 PPP1R2P41236 205 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 CRKLP46109 303 aaKnown RBP23.51■■□□□ 1.35
UPF3A-202ENST00000375299 ALS2CLQ60I27 953 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 DEF6Q9H4E7 631 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 ARHGAP20Q9P2F6 1191 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 TNFRSF8P28908 595 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 SKOR1P84550 965 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 SLC7A5Q01650 507 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 PARP10Q53GL7 1025 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 HAUS3Q68CZ6 603 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 TYW1BQ6NUM6 668 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 TSEN2Q8NCE0 465 aaKnown RBP23.51■■□□□ 1.35
UPF3A-202ENST00000375299 CAVIN3Q969G5 261 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 ALS2CR12Q96Q35 445 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 RUFY1Q96T51 708 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 STIM2Q9P246 746 aa23.51■■□□□ 1.35
UPF3A-202ENST00000375299 CASZ1Q86V15 1759 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 LIG3P49916 1009 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 KIF11P52732 1056 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 CCDC178Q5BJE1 867 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 NFRKBQ6P4R8 1299 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 ZNF384Q8TF68 577 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 HSF2BPO75031 334 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 LCA5LO95447 670 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 MATR3P43243 847 aaKnown RBP eCLIP23.5■■□□□ 1.35
UPF3A-202ENST00000375299 STK4Q13043 487 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 TTMPQ5BVD1 217 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 CCDC181Q5TID7 509 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 TRIM9Q9C026 710 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 PCDHA6Q9UN73 950 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 PCDHA8Q9Y5H6 950 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 WNK3Q9BYP7 1800 aa23.5■■□□□ 1.35
UPF3A-202ENST00000375299 FLT1P17948 1338 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 SCN7AQ01118 1682 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 LAD1O00515 517 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 NTSR2O95665 410 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 PLCG1P19174 1290 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 C2CD5Q86YS7 1000 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 COL4A1P02462 1669 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 ATP6V1AP38606 617 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 PRPHP41219 470 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 MRPS25P82663 173 aaKnown RBP23.49■■□□□ 1.35
UPF3A-202ENST00000375299 INF2Q27J81 1249 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 CABP7Q86V35 215 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 KAT2BQ92831 832 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 ARL8AQ96BM9 186 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 RABEP2Q9H5N1 569 aa23.49■■□□□ 1.35
UPF3A-202ENST00000375299 A6NNZ2 444 aa23.48■■□□□ 1.35
UPF3A-202ENST00000375299 NKRFO15226 690 aaKnown RBP eCLIP23.48■■□□□ 1.35
UPF3A-202ENST00000375299 TUBB8Q3ZCM7 444 aa23.48■■□□□ 1.35
UPF3A-202ENST00000375299 RCSD1Q6JBY9 416 aa23.48■■□□□ 1.35
UPF3A-202ENST00000375299 C7orf25Q9BPX7 421 aa23.48■■□□□ 1.35
UPF3A-202ENST00000375299 KIAA1551Q9HCM1 1747 aa23.48■■□□□ 1.35
UPF3A-202ENST00000375299 TSPY2A6NKD2 308 aa23.48■■□□□ 1.35
UPF3A-202ENST00000375299 EIF4A3P38919 411 aaKnown RBP23.48■■□□□ 1.35
UPF3A-202ENST00000375299 ASIC1P78348 528 aa23.48■■□□□ 1.35
UPF3A-202ENST00000375299 POTEDQ86YR6 584 aa23.48■■□□□ 1.35
UPF3A-202ENST00000375299 DAGLBQ8NCG7 672 aa23.48■■□□□ 1.35
UPF3A-202ENST00000375299 SMARCAL1Q9NZC9 954 aa23.48■■□□□ 1.35
UPF3A-202ENST00000375299 COL16A1Q07092 1604 aaPredicted RBP23.47■■□□□ 1.35
UPF3A-202ENST00000375299 FCER1AP12319 257 aa23.47■■□□□ 1.35
UPF3A-202ENST00000375299 PAFAH1B1P43034 410 aa23.47■■□□□ 1.35
UPF3A-202ENST00000375299 NNTQ13423 1086 aa23.47■■□□□ 1.35
UPF3A-202ENST00000375299 C8orf74Q6P047 294 aa23.47■■□□□ 1.35
UPF3A-202ENST00000375299 DCP1AQ9NPI6 582 aaPredicted RBP23.47■■□□□ 1.35
UPF3A-202ENST00000375299 EHD2Q9NZN4 543 aa23.47■■□□□ 1.35
UPF3A-202ENST00000375299 NIP7Q9Y221 180 aaKnown RBP eCLIP23.47■■□□□ 1.35
UPF3A-202ENST00000375299 SIK3Q9Y2K2 1263 aa23.47■■□□□ 1.35
UPF3A-202ENST00000375299 CXCR5P32302 372 aa23.47■■□□□ 1.35
UPF3A-202ENST00000375299 TTC19Q6DKK2 380 aaPredicted RBP23.47■■□□□ 1.35
UPF3A-202ENST00000375299 AK8Q96MA6 479 aa23.47■■□□□ 1.35
UPF3A-202ENST00000375299 PSMB7Q99436 277 aa23.47■■□□□ 1.35
UPF3A-202ENST00000375299 AKR1B10O60218 316 aa23.46■■□□□ 1.35
UPF3A-202ENST00000375299 VWA3BQ502W6 1294 aa23.46■■□□□ 1.35
UPF3A-202ENST00000375299 COBLL1Q53SF7 1204 aa23.46■■□□□ 1.35
UPF3A-202ENST00000375299 MCTP2Q6DN12 878 aa23.46■■□□□ 1.35
UPF3A-202ENST00000375299 ZIM3Q96PE6 472 aa23.46■■□□□ 1.35
UPF3A-202ENST00000375299 TCP11L1Q9NUJ3 509 aa23.46■■□□□ 1.35
UPF3A-202ENST00000375299 A0A0G2JS52 829 aa23.45■■□□□ 1.35
UPF3A-202ENST00000375299 EPHB6O15197 1021 aa23.45■■□□□ 1.35
UPF3A-202ENST00000375299 PJA2O43164 708 aa23.45■■□□□ 1.35
UPF3A-202ENST00000375299 CYP2D6P10635 497 aa23.45■■□□□ 1.35
UPF3A-202ENST00000375299 INPP5BP32019 993 aa23.45■■□□□ 1.35
UPF3A-202ENST00000375299 CCDC155Q8N6L0 562 aa23.45■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms