RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 CXCR5P32302 372 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 DNAJC21Q5F1R6 531 aaKnown RBP18.25■□□□□ 0.51
SDC4-201ENST00000372733 CCDC70Q6NSX1 233 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 C2CD5Q86YS7 1000 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 TRIM58Q8NG06 486 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 ERGIC2Q96RQ1 377 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 TSGA10Q9BZW7 698 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 ARPP21Q9UBL0 812 aaPredicted RBP18.25■□□□□ 0.51
SDC4-201ENST00000372733 MINPP1Q9UNW1 487 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 JRKLQ9Y4A0 524 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 KIAA1551Q9HCM1 1747 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 TACC1O75410 805 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 ATP6V1AP38606 617 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 ERFEQ4G0M1 354 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 FAM114A1Q8IWE2 563 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 MMGT1Q8N4V1 131 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 FAM207AQ9NSI2 230 aaPredicted RBP18.24■□□□□ 0.51
SDC4-201ENST00000372733 MCM9Q9NXL9 1143 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 CYTH3O43739 400 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 FKBP15Q5T1M5 1219 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 ZSCAN29Q8IWY8 852 aaPredicted RBP18.24■□□□□ 0.51
SDC4-201ENST00000372733 DYNLL2Q96FJ2 89 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 ATP8A2Q9NTI2 1148 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 MAD2L2Q9UI95 211 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 PCDHA13Q9Y5I0 950 aa18.24■□□□□ 0.51
SDC4-201ENST00000372733 A0A1W2PQJ5 194 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 STXBP3O00186 592 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 CCT5P48643 541 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 KIF11P52732 1056 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 CDK17Q00537 523 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 KIAA0895Q8NCT3 520 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 SPATA4Q8NEY3 305 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 IPO4Q8TEX9 1081 aaKnown RBP18.23■□□□□ 0.51
SDC4-201ENST00000372733 PPM1EQ8WY54 764 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 TFCP2L1Q9NZI6 479 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 CASZ1Q86V15 1759 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 DOT1LQ8TEK3 1739 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 EXOC5O00471 708 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 NCK2O43639 380 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 EIF4A3P38919 411 aaKnown RBP18.23■□□□□ 0.51
SDC4-201ENST00000372733 IRAK1P51617 712 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 ITPK1Q13572 414 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 GRM4Q14833 912 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 FIGNQ5HY92 759 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 AMOTL1Q8IY63 956 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 CELF1Q92879 486 aaKnown RBP18.23■□□□□ 0.51
SDC4-201ENST00000372733 CCDC47Q96A33 483 aaKnown RBP18.23■□□□□ 0.51
SDC4-201ENST00000372733 OSBPL9Q96SU4 736 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 CPVLQ9H3G5 476 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 SEMA6BQ9H3T3 888 aa18.23■□□□□ 0.51
SDC4-201ENST00000372733 USP17L3A6NCW0 530 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 USP17L4A6NCW7 530 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 USO1O60763 962 aaKnown RBP18.22■□□□□ 0.51
SDC4-201ENST00000372733 USP17L1Q7RTZ2 530 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 TSEN2Q8NCE0 465 aaKnown RBP18.22■□□□□ 0.51
SDC4-201ENST00000372733 SLC39A2Q9NP94 309 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 TCP11L1Q9NUJ3 509 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 BSDC1Q9NW68 430 aaPredicted RBP18.22■□□□□ 0.51
SDC4-201ENST00000372733 OR52Z1P0C646 297 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 ERCC3P19447 782 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 ATP2B2Q01814 1243 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 LETM2Q2VYF4 491 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 SBK1Q52WX2 424 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 TTC19Q6DKK2 380 aaPredicted RBP18.22■□□□□ 0.51
SDC4-201ENST00000372733 DAGLBQ8NCG7 672 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 CUEDC2Q9H467 287 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 PLAGL2Q9UPG8 496 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 MYH1P12882 1939 aa18.22■□□□□ 0.51
SDC4-201ENST00000372733 PRPHP41219 470 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 HAUS3Q68CZ6 603 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 ZNF572Q7Z3I7 529 aaPredicted RBP18.21■□□□□ 0.51
SDC4-201ENST00000372733 FBXO33Q7Z6M2 555 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 ANKRD13CQ8N6S4 541 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 ACSBG1Q96GR2 724 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 C7orf25Q9BPX7 421 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 DEF6Q9H4E7 631 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 BARHL2Q9NY43 387 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 SIK3Q9Y2K2 1263 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 GOLGA8HP0CJ92 632 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 PPFIA1Q13136 1202 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 EFCAB13Q8IY85 973 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 MAGEF1Q9HAY2 307 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 SALL4Q9UJQ4 1053 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 HYOU1Q9Y4L1 999 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 GRIN2DO15399 1336 aa18.21■□□□□ 0.51
SDC4-201ENST00000372733 LAD1O00515 517 aa18.2■□□□□ 0.5
SDC4-201ENST00000372733 AKR1B10O60218 316 aa18.2■□□□□ 0.5
SDC4-201ENST00000372733 CCNT1O60563 726 aaKnown RBP18.2■□□□□ 0.5
SDC4-201ENST00000372733 CAPS2Q9BXY5 557 aa18.2■□□□□ 0.5
SDC4-201ENST00000372733 MMRN2Q9H8L6 949 aa18.2■□□□□ 0.5
SDC4-201ENST00000372733 LRRC53A6NM62 1247 aa18.2■□□□□ 0.5
SDC4-201ENST00000372733 HNRNPH3P31942 346 aaKnown RBP18.2■□□□□ 0.5
SDC4-201ENST00000372733 GNGT1P63211 74 aa18.2■□□□□ 0.5
SDC4-201ENST00000372733 SEMA3FQ13275 785 aa18.2■□□□□ 0.5
SDC4-201ENST00000372733 VWA3BQ502W6 1294 aa18.2■□□□□ 0.5
SDC4-201ENST00000372733 CCDC181Q5TID7 509 aa18.2■□□□□ 0.5
SDC4-201ENST00000372733 TADA2BQ86TJ2 420 aa18.2■□□□□ 0.5
SDC4-201ENST00000372733 DGKHQ86XP1 1220 aa18.2■□□□□ 0.5
SDC4-201ENST00000372733 MYH14Q7Z406 1995 aaKnown RBP18.2■□□□□ 0.5
SDC4-201ENST00000372733 TECP42680 631 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms